Couchioplanes caeruleus: COUCH_17875
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Entry
COUCH_17875 CDS
T08133
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
ccaz
Couchioplanes caeruleus
Brite
KEGG Orthology (KO) [BR:
ccaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaz03021
]
COUCH_17875
Transcription machinery [BR:
ccaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
COUCH_17875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_Crp_2
HTH_10
MarR
DUF134
GerE
DUF7343
HTH_3
HTH_23
HTH_31
HTH_24
Sigma70_ECF
HTH_37
HTH_Tnp_4
MarR_2
Motif
Other DBs
NCBI-ProteinID:
UQU68032
LinkDB
All DBs
Position
3872385..3873179
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AA seq
264 aa
AA seq
DB search
MTATALRTGTPSSSSTDSAADLLAAMGAVAPTDPRRAVLRDRAIEAWLPLARHLAHRYSG
RGEPTDDLVQTATVGLIKAVDKFDPERGVDFAGYAIPTIIGEIKRHFRDRTWSVRVPRRL
QELRLAITEANATLTHTLGRSPQVADIAVHLGVTEEDVLEGLEGARAYNATSLSTPISAD
GTTELGDTLGGEDHEYELAETRVALGPALASLDEREQKILTLRFYGNLTQSQIAEQIGIS
QMHVSRLLTKALTKLRTQLAAETL
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atgactgccaccgcattacgaaccggcacgccgtcgtcctcgagcacggacagtgccgcc
gacctcctcgccgccatgggcgccgtcgcgccgacggacccccgtcgcgccgtgctgcgg
gaccgggcgatcgaggcctggctgccgctggcccgccacctcgcgcaccgctactccggc
cgcggcgagcccaccgacgacctcgtgcagaccgccaccgtcggcctgatcaaggccgtc
gacaagttcgaccccgaacgcggcgtcgacttcgccggctacgccatccccaccatcatc
ggcgagatcaagcgccacttccgcgaccgcacctggtccgtgcgcgtgccgcgccgcctg
caggaactgcgcctggccatcaccgaggccaacgccaccctcacccacaccctgggccgc
tccccgcaggtcgccgacatcgccgtacacctcggcgtcaccgaggaagacgtcctggaa
ggcctcgaaggcgcccgcgcctacaacgccaccagcctgtccaccccgatcagcgccgac
ggcaccaccgaactcggcgacaccctcggcggcgaggaccacgaatacgaactcgccgag
acccgcgtcgccctcggccccgccctggccagcctcgacgaacgcgagcagaagatcctc
accctgcgcttctacggcaacctcacccagtcgcagatcgccgagcagatcggcatctcc
cagatgcacgtcagccgcctgctcaccaaggccctgaccaagctgcgcacccagctcgcc
gccgagaccctctga
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