Couchioplanes caeruleus: COUCH_20040
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Entry
COUCH_20040 CDS
T08133
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccaz
Couchioplanes caeruleus
Pathway
ccaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COUCH_20040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaz03019
]
COUCH_20040
03009 Ribosome biogenesis [BR:
ccaz03009
]
COUCH_20040
Enzymes [BR:
ccaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COUCH_20040
Messenger RNA biogenesis [BR:
ccaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
COUCH_20040
Ribosome biogenesis [BR:
ccaz03009
]
Prokaryotic type
rRNA helicases
COUCH_20040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
CMS1
Motif
Other DBs
NCBI-ProteinID:
UQU61356
LinkDB
All DBs
Position
4344165..4345853
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AA seq
562 aa
AA seq
DB search
MEDDPFEAVAGFAGLGLRAELLRALSALGYEEPTPIQQEAIPPLIAGNDLVGQAATGTGK
TAAFALPLLQALTGEGRDGGPAALVLVPTRELAEQVSQAVHRYGRELGVRVLPVYGGQPI
GRQLQALQRGVDVVVGTPGRVLDHIERGTLRLGDVRTVVLDEADEMLDMGFAEDIEAILA
ETPQSRQTVLFSATMPPRIDGIARRHLREPVRITMGREAPAAGEMPLVRQSAYMVAKAHR
SAALGRILDVEMPTAAIVFCRTREEVDQVTEALNGRGYRAEALHGGMSQDQRDRVMGRLR
GGSTELLVATDVAARGLDVEQLTHVINFNVPAAPEAYVHRIGRVGRAGREGSAITLAEPR
EQRMLKAIERLTGQRITLEKLPTVTDLRARRLEKTRTALQASLETDDLERFRVVLDSLTD
EFDVENIALAAVKLLHEAAGGDVDEDDIPIPAAPAGRNAQNRDARPGSGGRERRPGARGS
DAGVARLFFGIGRRAGLRPQDLVGAIAGESGLSARDIGAIQITDRFSLVEVPEPAADMVI
AAMQRSTIRGRRPTVRRERFVR
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgatccgttcgaggccgtggcgggtttcgccgggctgggtttgcgggcggag
ctgctccgtgcgttgagtgccctcgggtacgaggagccgaccccgatccagcaggaggcg
atccctccgctgatcgccggcaacgaccttgtcggtcaggccgccaccggcaccgggaag
accgccgcgttcgcgctgccgctgctgcaggcgctgaccggggagggccgcgacggcgga
ccggccgcgctggttctcgtgccgacccgggagctggccgagcaggtctcccaggcggtc
caccggtacggccgggagctgggcgtccgggttctgcccgtgtacggcggccagcccatc
ggacggcagctgcaggcgttgcagcggggcgtggacgtcgtcgtggggacgccggggcgg
gtgctcgaccacatcgagcgggggacgctgcggctgggcgatgtgcgtaccgtcgtgctg
gacgaggccgacgagatgctggacatggggttcgccgaggacatcgaggcgattctcgcc
gagaccccgcagagccggcagaccgtgctgttctccgccacgatgccgccccggatcgac
ggcatcgcccggcggcacctgcgtgagccggtccggatcacgatggggcgggaggccccg
gcggcgggggagatgccgctggtgcggcagagcgcgtacatggtcgccaaggcgcaccgg
tcggccgcgctggggcggatcctcgacgtcgagatgccgacggcggcgatcgtcttctgc
cgtacgcgcgaggaggtcgaccaggtcaccgaggcgctgaacgggcgcggttaccgggcg
gaggcgctgcacggcggcatgagccaggaccagcgcgaccgggtcatgggccggctgcgc
ggcggcagcaccgagctgctggtggccaccgacgtggccgcccgcgggctggacgtggag
cagctgacccacgtcatcaacttcaacgtgccggccgcgccggaggcgtacgtgcaccgg
atcggccgggtgggccgggccgggcgggagggttccgcgatcaccctcgccgagccgcgc
gagcagcggatgctcaaggccatcgagcggctcaccgggcagcgcatcaccctggagaag
ctgccgacggtcaccgacctgcgggcccggcggctggagaagacgcgtacggcgctgcag
gcgagcctggagaccgacgacctggagcggttccgggtggtcctggactcgctcaccgac
gagttcgacgtggagaacatcgcgctggccgccgtgaagctgttgcacgaggcggccggc
ggcgacgtcgacgaggacgacatccccatccccgccgcgcccgcgggccgcaacgcgcag
aaccgggacgcccggccgggcagtgggggacgcgagcgccgccccggcgcacgagggtcg
gacgcgggcgtggcccggctgttcttcggcatcggccggcgggccgggctgcggccgcag
gacctggtcggggcgatcgccggcgagtccgggctgagcgcgcgcgacatcggcgcgatc
cagatcaccgaccggttctcgctggtggaggtgcccgagccggccgccgacatggtcatc
gcggcgatgcagcgcagcaccatccgcgggcggcgtccgacggtacgccgggagcgcttc
gtccgctag
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