Couchioplanes caeruleus: COUCH_22610
Help
Entry
COUCH_22610 CDS
T08133
Name
(GenBank) right-handed parallel beta-helix repeat-containing protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ccaz
Couchioplanes caeruleus
Pathway
ccaz00040
Pentose and glucuronate interconversions
ccaz01100
Metabolic pathways
ccaz02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ccaz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
COUCH_22610
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
COUCH_22610
Enzymes [BR:
ccaz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
COUCH_22610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
UQU61834
LinkDB
All DBs
Position
complement(4880474..4881469)
Genome browser
AA seq
331 aa
AA seq
DB search
MRTKLLGASAGAATLVLVGAGLAGAGSAFAADQPAAAPAAAPRAAAVTDLVGWATQNGGT
TGGGSASATTVSSASALTSAVGSSSAAVIRVSGTISCSGMLRVRSNKTIIGNAGATIVGC
GLNVNGDRNVIIRNLTFRDWDDDAVNVQSSATNIWIDHNTFSHGHDGAVDIKRGSDFVTV
SWNRVFNHDKSMLLGHSDSNGSEDTGHLRVTYHHNWFDASTQRHPRVRFGNPVHVYNNYY
YKNSGYGVASTEGAGVLVENNSFEGVPDPYHLGEADSGPGTLVARGNLLVNSGAGQTGGS
VKSIPYAYTADPASNVKSIVTANAGAGRISL
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacaaaactgctcggcgcctccgccggcgcggccacgctcgttctcgtgggcgcc
ggactggccggagccggttccgccttcgccgccgatcagcccgcggcggcgccggcggcc
gcaccccgggcggcggccgtcaccgacctcgtcgggtgggcgacccagaacggcgggacc
accggcggcggcagtgcctcggccaccacggtgagcagcgcctccgcgctgacctcggcc
gtcggttcgagctcggcggcggtgatccgggtctccggcacgatcagctgctcgggcatg
ctgcgggtccgctccaacaagaccatcatcggcaacgcgggcgcgacgatcgtgggctgc
gggctgaacgtcaacggcgaccgcaacgtcatcatccggaacctgacgttccgcgactgg
gacgacgacgcggtcaacgtgcagtcctcggccacgaacatctggatcgaccacaacacg
ttcagccacggccacgacggcgcggtcgacatcaagcgcgggtcggacttcgtgacggtc
tcgtggaaccgggtgttcaaccacgacaagtcgatgctgctcggccacagcgacagcaac
ggcagcgaggacaccgggcacctgcgggtgacctaccaccacaactggttcgacgcgtcg
acgcagcggcacccgcgggtgcgcttcggcaacccggtgcacgtctacaacaactactac
tacaagaacagcgggtacggcgtggcctcgaccgagggcgccggcgtgctcgtggagaac
aactcgttcgagggcgtgccggacccgtaccacctcggtgaggccgactcgggcccgggc
acgctggtggcgcggggcaacctgctcgtcaactccggcgccgggcagaccggcggcagc
gtcaagagcatcccgtacgcgtacaccgccgacccggcgagcaacgtcaagtccatcgtc
acggcgaacgcgggcgcggggcgcatctcgctctga
DBGET
integrated database retrieval system
