Couchioplanes caeruleus: COUCH_26075
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Entry
COUCH_26075 CDS
T08133
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ccaz
Couchioplanes caeruleus
Pathway
ccaz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
COUCH_26075 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccaz03400
]
COUCH_26075 (ligD)
Enzymes [BR:
ccaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
COUCH_26075 (ligD)
DNA repair and recombination proteins [BR:
ccaz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
COUCH_26075 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UQU62489
LinkDB
All DBs
Position
complement(5615162..5616394)
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AA seq
410 aa
AA seq
DB search
MRIPPPGLTVAAAGTSLEIMELPESIAPMLATLGEPSAEPGQAIEFKWDGIRCVAFAEGG
GVRLQTRNGNDVTAGYPELARLPEVAGGRPVALDGEIVALDEAGRPSFARLQQRMHVADP
SPALVAAVPVVYYVFDLLHLDGVSTMPLPYAERRDLLAGLALSSGEVRVPPHFVDADPQA
IMTAAQARGLEGIVVKRLGSAYQPGRRSPSWIKVPVSLTQEVVIIGWKPGQGRRAGTIGS
LLTAVAGPDARLSFAGGVGTGFTHQMLTHLQDVLRPYARGTAPVPGIPREFARGAHWVEP
LFVGEVAYRNWTPDGRLRHPSWRGLRPDKTPAQARRDVYAPSSPAAEVKGAMVTPDGLWR
VEVVSRGGVESFRVVQGDNVLEGLDIHGVEGLLAQRGVELRSLRHADPAA
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatcccgccgcccggcttgacggtcgccgccgcagggacgtcactggagatcatg
gagttgcccgagtcgatcgcgccgatgctcgccacgctcggcgagccgtccgcggagccc
gggcaggcgatcgagttcaagtgggacggcatccggtgcgtcgcgttcgccgagggtggc
ggcgtacgcctgcagacccgtaacggcaacgacgtcacggccgggtacccggaactggcc
cggctgccggaggtggccggcggccggccggtggcgctcgacggcgagatcgtggcgctg
gacgaggccggccgcccctcgttcgcccggctccagcagcgcatgcacgtggcggatccg
tcgcccgcgctcgtcgcggcggtgcccgtcgtctactacgtgttcgacctgctccacctc
gacggggtgtcgaccatgccgctcccgtacgccgaacgccgcgacctgcttgccggcctg
gccctgagctccggcgaggtccgggtgccgccgcacttcgtcgacgccgacccgcaggcg
atcatgacggccgcgcaggcccgggggctcgagggcatcgtcgtcaagcggctcgggtcg
gcgtaccagccggggcggcgctcgccgagctggatcaaggtgccggtctcgctcacccag
gaggtcgtgatcatcggctggaaaccgggccagggccgccgtgccggcaccatcggctcg
ctgttgacggcggtggcgggcccggacgcacggctgtccttcgccggcggggtcggcacc
gggttcacccatcagatgctcactcacctgcaggacgtgctgcgaccgtacgcccgcggc
accgcgcccgtgcccgggatcccgcgcgagttcgcccgcggcgcccactgggtggagccg
ctgttcgtgggggaggtggcgtaccggaactggacgccggacggccggctgcggcacccg
tcgtggcgcgggctgcggccggacaagacgccggcccaggcgcggcgcgacgtgtacgcc
ccgtcgtcccccgccgcggaggtcaagggcgcgatggtgacgccggacgggctgtggcgc
gtcgaggtggtcagccgcggcggggtggagtcgttccgggtcgtgcagggcgacaacgtc
ctggagggcctggacatccacggcgtcgaagggctgctcgcgcagcgcggggtcgaactg
cggtcgctccgccacgccgaccccgccgcctga
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