Couchioplanes caeruleus: COUCH_29590
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Entry
COUCH_29590 CDS
T08133
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ccaz
Couchioplanes caeruleus
Pathway
ccaz03030
DNA replication
ccaz03430
Mismatch repair
ccaz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
COUCH_29590 (dnaE)
03430 Mismatch repair
COUCH_29590 (dnaE)
03440 Homologous recombination
COUCH_29590 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccaz03032
]
COUCH_29590 (dnaE)
03400 DNA repair and recombination proteins [BR:
ccaz03400
]
COUCH_29590 (dnaE)
Enzymes [BR:
ccaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
COUCH_29590 (dnaE)
DNA replication proteins [BR:
ccaz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
COUCH_29590 (dnaE)
DNA repair and recombination proteins [BR:
ccaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
COUCH_29590 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UQU63144
LinkDB
All DBs
Position
complement(6408818..6412351)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSDSFVHLHVHTEYSMLDGAARLKDLFTEANRLGMPAVAITDHGNMHGAYDFYTQATAAG
VTPVIGIEAYVAPESRLHKARVKWGRPEQKSDDISGNGAITHKTMWARNAQGLKNLFRLS
SRASMEGHYVKWPRMDMDIIAEHAEGIMATTGCPSGAVQTRLRLGQDEEAFKVAAQYQEI
FGKDNYFLEIMDHGLEIENRVRDGLLDISRRLGIPPLVTNDSHYTHESQAEAHDVLLCVQ
TGSNIADPNRFRFDGGGYFIKSADQMRAVDSSDAWLEGCRNTLLVAEKVDTEGMFTFKNL
MPRFPVPEGHTEESWFRHEAFEGLKRRFPDGIPETHIKQAEYELGVISQMGFPSYFLVVA
DFIQWSKRNGIAVGPGRGSAAGSLIAYAMGITDLDPLPHGLIFERFLNPERVSMPDVDID
FDERRRGEVIRYVTERWGEDKVAQIATFGTIKAKAAIKDSARVLGYPFAVGDRITKALPP
DVMGKGIPLSGIFDKEHKRYGEAGEVRALYEQDPDVKKVIDTARGIEGLIRQTGVHAAGV
IMSAEPIIDHIPLMRRATDGVIITQFDYPTCETLGLLKMDFLGLRNLTILDDAVKNIQLN
HSKELDLLALPLDDKPSYELLARGDTLGVFQLDGGPMRSLLRLMKPDNFEDISAVLALYR
PGPMGVESHTNYALRKNKLQDITPIHPELEEPLREILEPTYGLIVYQEQVQRAAQILAGY
SLGQADLLRRAMGKKKKEILDKEFIPFRDGCREHGYSDEAIQAVWDVLVPFAGYAFNKAH
SAAYGLVSYWTAYLKAHYPAEYMAGLLTSVGDDKDKMAMYLAECRRMGIQVLPPDVNESA
GPFTPVGKDIRFGLAAIRNVGHNVVEAIARCREEKGNYQDFYDFLSKVDAVACNKKTIES
LIKAGAFDSMKHSRKGLLAVHAEAIDAYADVKRNEAAGQFDLFGAFGDEAGGSSATVAMP
PITDGEWDKRDKLAFEREMLGLYVSDHPLAGLEQVLANAADTTIAALNEEGSVPDGQVVT
LAGILTGVQRRITKQGRAWASATLEDLAGGVETLFFPNTYEVIGQYIAEDAIVVVKGRVD
RRDDTPRIMAMDMSMPDVTHNPDTKPITLTMPITRCTPPLVSELKEILVSHPGDSEVHVH
LLNGSRKTVMRLGGFKVAATPALRADLKMILGPSAVA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgactcgttcgtgcacctccacgtgcacaccgagtattcgatgctcgacggcgcc
gcccggctgaaggatctgttcaccgaggccaaccgcctcgggatgcccgccgtggcgatc
accgaccacggcaacatgcacggggcgtacgacttctacacgcaggcgaccgcggcgggc
gtcacgccggtcatcggcatcgaggcgtacgtggcccccgagtcgcgcctgcacaaggcg
cgcgtcaagtggggccgcccggagcagaagtccgacgacatctcgggtaacggcgcgatc
acccacaagaccatgtgggcgcgcaacgcgcagggtctgaagaacctgttccgcctgagc
agccgggcgtccatggagggccactacgtcaagtggccgcgcatggacatggacatcatc
gccgagcacgccgagggcatcatggccaccaccggctgcccctccggcgcggtgcagacc
cggctgcgcctgggacaggacgaggaggccttcaaggtcgccgcgcagtaccaggagatc
ttcggcaaggacaactacttcctcgagatcatggaccacggcctcgagatcgagaaccgg
gtccgcgacggcctgctcgacatcagccgccggctcggcatcccgccgctggtcaccaac
gactcgcactacacccacgagtcgcaggccgaggcgcacgacgtgctgctgtgcgtgcag
accggcagcaacatcgccgaccccaaccggttccgcttcgacggcggcggctacttcatc
aagtccgccgaccagatgcgcgcggtggactcctccgacgcctggctggagggctgccgc
aacacgctgctggtggccgagaaggtcgacaccgagggcatgttcaccttcaagaacctc
atgccgcgcttcccggtgcccgagggacacaccgaggagtcctggttccggcacgaggcg
ttcgaggggctcaagcgccggttcccggacggcatcccggagacccacatcaagcaggcg
gagtacgagctcggcgtcatcagccagatgggcttcccgtcgtacttcctcgtggtcgcc
gacttcatccagtggtcgaagcgcaacggcatcgcggtcggcccgggccgtggctcggcg
gcgggctcgctgatcgcgtacgcgatgggcatcaccgacctggacccgctgccgcacggc
ctgatcttcgagcggttcctcaaccccgagcgcgtctccatgcccgacgtcgacatcgac
ttcgacgagcgccggcgcggcgaggtcatccgctacgtcaccgagcggtggggcgaggac
aaggtcgcgcagatcgccacgttcggcacgatcaaggccaaggccgcgatcaaggactcg
gcgcgggtgctcggctacccgttcgcggtcggcgaccggatcaccaaggcgctcccgccg
gacgtgatgggcaagggcatcccgctgtccggcatcttcgacaaggagcacaagcgctac
ggcgaggccggcgaggtccgcgccctgtacgagcaggaccccgacgtcaagaaggtgatc
gacaccgcgcgcggcatcgagggcctgatccggcagaccggcgtgcacgccgccggcgtc
atcatgagcgccgagccgatcatcgaccacatcccgctgatgcgccgcgccaccgacggc
gtgatcatcacgcagttcgactacccgacctgcgagacgctcgggctgctgaagatggac
ttcctcggcctgcgcaacctgacgatcctcgacgacgccgtgaagaacatccagctcaac
cacagcaaggagctggacctgctggcgttgccgctggacgacaagccgtcgtacgagctg
ctcgcccgcggcgacacgctgggcgtcttccagctcgacggcgggccgatgcggtcgctg
ctgcggctgatgaagccggacaacttcgaggacatctccgccgtcctggcgctgtaccgt
cccggcccgatgggcgtcgagtcgcacaccaactacgcgctgcgcaagaacaagctgcag
gacatcacgccgatccaccccgagctggaggaaccgctccgcgagatcctcgagccgacg
tacggcctgatcgtctaccaggagcaggtgcagcgcgccgcgcagatcctcgccggctac
agcctcggccaggccgacctgctgcgccgggcgatgggcaagaagaagaaggagatcctc
gacaaggagttcatccccttccgcgacggctgccgcgagcacggctacagcgacgaggcg
atccaggcggtgtgggacgtgctggtcccgttcgccgggtacgcgttcaacaaggcgcac
tcggcggcgtacggcctggtgtcgtactggacggcgtacctcaaggcgcactacccggcg
gagtacatggccgggctgctgaccagcgtcggcgacgacaaggacaagatggcgatgtac
ctggccgagtgccggcgcatgggcatccaggtcctcccgcccgacgtcaacgagtccgcc
ggcccgttcacgccggtcggcaaggacatccggttcggtctcgccgcgatccgcaacgtc
gggcacaacgtggtcgaggcgatcgcccgctgccgcgaggagaagggcaactaccaggac
ttctacgacttcctgtccaaggtggacgccgtcgcctgcaacaagaagacgattgaatcc
ctgatcaaggccggcgccttcgactcgatgaagcacagccgcaaggggctgctggcggtg
cacgcggaggcgatcgacgcgtacgccgacgtcaagcgcaacgaggccgcgggccagttc
gacctcttcggcgcgttcggcgacgaggccgggggcagctccgcgaccgtggccatgccg
ccgatcaccgacggcgagtgggacaagcgcgacaagctcgccttcgagcgcgagatgctc
ggcctgtacgtctccgaccacccgctcgccggcctcgagcaggtgctggcgaacgccgcc
gacaccacgatcgcggcgctcaacgaggagggctcggttccggacgggcaggtcgtcacg
ctcgccggcatcctcaccggcgtccagcggcggatcaccaagcagggccgcgcctgggcg
tcggccacgctggaggacctcgccggcggggtggagacgctgttcttccccaacacgtac
gaggtcatcggccagtacatcgccgaggacgcgatcgtcgtcgtgaagggccgggtcgac
cggcgcgacgacacgccccggatcatggcgatggacatgtcgatgccggacgtgacgcac
aacccggacaccaagccgatcacgctgaccatgccgatcacccgctgcacgccgccgctg
gtgtccgagctcaaggagatcctggtcagccacccgggcgacagcgaggtgcacgtccac
ctgctcaacggcagccgcaagacggtcatgcgcctcggcgggttcaaggtcgcggcgacg
cccgcgctgcgggccgacctgaagatgatcctcggcccgtcggcggtcgcctga
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