Couchioplanes caeruleus: COUCH_37510
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Entry
COUCH_37510 CDS
T08133
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ccaz
Couchioplanes caeruleus
Pathway
ccaz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
COUCH_37510 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccaz03400
]
COUCH_37510 (ligD)
Enzymes [BR:
ccaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
COUCH_37510 (ligD)
DNA repair and recombination proteins [BR:
ccaz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
COUCH_37510 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
UQU64585
LinkDB
All DBs
Position
complement(8155241..8156194)
Genome browser
AA seq
317 aa
AA seq
DB search
MPGAPLSPMLATAGPLPAGAGWSYEFKWDGVRVLASFAAGGPPQLWARSGASVTPAYPEL
TALALPPDTVLDGEMVVLDAAGRPSFTSLAERMHVRDTGKAARLAVTLPATYMIFDLLRY
DGAWLLDLPYEERRARLERLDLGAGPWMVPPAFPDGAATAAAARENSLEGVVAKRLGTPY
LPGARSPDWIKVKFDRTGDYVIGGWRSGARQLGGLLVGVPGPDGRMLFRGRVGGGIGAAA
ERELLSVLEPLATRESPFTPGAVPREDARGAHWVSPDLVVEVRYGNRTPDGRLRFPRFLR
LRPDKTPAECVEDDDGG
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
gtgccgggcgcgcccctgtctcccatgctcgcgaccgcggggccactgccggccggcgcg
gggtggagctacgagttcaagtgggacggcgtccgcgtgctggcctccttcgccgccggc
gggccgccgcagctgtgggcccgttccggcgcgtccgtgaccccggcctatcccgagctc
acggcgctcgcgctgccgcccgacacggtgcttgacggcgagatggtggtgctcgacgcg
gcggggcggccctcgttcacctcgctcgccgagcgcatgcacgtccgggacaccgggaag
gctgcccggctggccgtgacgctgccggccacgtacatgatcttcgacctgctccggtac
gacggcgcctggctgctggacctgccgtacgaggagcgccgcgcccgcctcgagcggctc
gacctgggcgcggggccgtggatggtgccaccggccttccccgacggcgcggcgacggcg
gcggccgcccgggagaacagcctcgagggcgtggtcgcgaagcggctggggacgccgtac
ctgccgggcgcgcggtcaccggactggatcaaggtgaagttcgaccgtaccggcgactac
gtcatcggcgggtggcgctccggggcgcgccagctcggcgggctgctggtgggcgtaccc
gggccggacgggcggatgctgttccggggccgggtcggcggcgggatcggcgcggcggcg
gaacgtgagctcctgtccgtgctggagccgctggccacccgcgagtcgccgttcacgccg
ggcgccgtgccgcgcgaggatgcccgcggggcgcactgggtaagccccgacctggtggtc
gaggtgcgctacggcaaccgtacgccggacggccggctgcggttcccgcgcttcctgcgg
ctgcgccccgacaagacgccggcggaatgcgtggaggacgacgatggtgggtga
DBGET
integrated database retrieval system
