Clostridium cellulovorans: Clocel_0358
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Entry
Clocel_0358 CDS
T01294
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
ccb
Clostridium cellulovorans
Pathway
ccb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Clocel_0358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccb03400
]
Clocel_0358
DNA repair and recombination proteins [BR:
ccb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Clocel_0358
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Clocel_0358
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
DUF4391
Cas3-like_C_2
DUF87
Motif
Other DBs
NCBI-ProteinID:
ADL50138
UniProt:
D9SQ71
LinkDB
All DBs
Position
456055..458031
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AA seq
658 aa
AA seq
DB search
MEEFKIVSEYKPTGDQPQAIESISERVLAGDKFQTLLGVTGSGKTFTMANIIEKVQKPTL
VLAHNKTLAAQLCSEFREFFPDAAVEYFVSYYDYYQPEAYVAQTDTFIEKDASINDEIDR
LRHSATAALFERKDVIIVASVSCIYGLGNPDEYRKLSLSLRKGMEKDRDEIMRKLIDMQY
ERNDINFVRATFRVRGDILDIFPASSQKVGIKVEFFGEEIDRIREFDVLTGQILRELKHV
LIFPASHFASSKETVERSIGKIEAELDERVKELLAEEKLLEAQRLKQRTNFDIEMIREMG
YCQGIENYSRIMDGRNKGEPPKTLIDFFPEDFLMFIDESHVTLPQVRAMYGGDRSRKEAL
VNYGFRLPCAYDNRPLKFEEFEEKLKQVVFVSATPAKYEFDHSTNVAEQIIRPTGLLDPI
IEVRPIDGQIDDLYSSIQETIVRGFRILVTTLTKKMAEDLTDYLKEMGVKTNYLHSDVTT
IDRMKIIKELRMGDFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSNTSLIQTVGRA
ARNADSKVIMYADKITDSMSYTIKETERRRKIQIDYNEAHNITPTTIIKGIRDNIQISTI
AEEEAVYLTEETMSQEDLKKKIASLEKEMKAVAKELQFERAAELRDEINKLKTIMNND
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggaagagtttaaaatagtatcagaatacaaacccactggagatcagccccaagctata
gaaagcatttcagagagagtgcttgcaggtgataaatttcaaactctccttggtgtaact
ggttctggtaagaccttcaccatggcaaacataatagaaaaagttcaaaagccaacatta
gttcttgcacataacaagactttagctgcacagttatgttcagagtttagagaatttttt
cctgatgcagcagttgaatactttgtatcttattatgattattaccagccagaagcttat
gttgcacaaacagatacatttatagaaaaagatgcttctataaatgacgaaattgataga
ttaaggcattcagctactgcagcacttttcgaaagaaaggatgttataatagtagcttct
gtttcttgcatctatggactgggtaatccagacgaatatagaaaactttccttgtcctta
agaaagggaatggaaaaagacagagatgagataatgagaaagctcatcgatatgcaatat
gaaagaaatgatattaactttgtgagagccacatttagagtaagaggggatatcttagat
attttcccagcttcatctcaaaaagttggaatcaaggtagagttttttggagaagaaata
gatagaataagggaatttgatgttttgacagggcagatacttagagagttaaagcatgtg
cttattttccctgcatcccactttgcttcttctaaggaaactgtagaaagatctataggg
aaaattgaggcagaattagatgagagagtaaaagagctcttagcagaagaaaagctttta
gaagctcagagattaaagcaaagaaccaactttgatatagaaatgataagagagatggga
tattgccaaggaattgagaactactcaaggattatggatggcagaaataaaggagaacct
ccaaaaactttaatagatttctttccagaggattttttgatgttcatagatgaaagtcat
gtaacacttccacaggttagagctatgtatggaggagatcgttctagaaaggaagctttg
gttaattatggtttcaggttgccttgcgcttatgataacaggcctcttaaatttgaggaa
tttgaggaaaaactaaagcaagtagtttttgtaagtgctactcctgcaaaatatgaattt
gatcattcaactaatgttgcagagcaaataataagacctacaggacttttagacccaata
atcgaggtaagacctattgatggacaaattgatgacctctattcaagtatacaagaaact
atagttagaggttttagaattcttgttactacgctgacaaagaagatggcagaggattta
actgattacctaaaagaaatgggagttaagacaaattacctacactcagatgtaacaact
atagatagaatgaaaataatcaaagaacttagaatgggtgattttgatgtgctagttgga
attaaccttttaagagaaggattggatataccggaagttgcattagtagcaatccttgat
gctgataaagaaggctttttaaggtcaaatacttcattaattcagactgtaggaagagct
gctagaaatgctgatagtaaagttataatgtatgcagataagataaccgattctatgagt
tatacgataaaagaaacggaaagaagaagaaagattcagatagattacaatgaagcacat
aatattactcctactactatcataaagggtataagggataatattcagatatctacaata
gctgaagaagaagctgtatatttaacagaagaaacaatgtcacaagaagatttgaaaaag
aagatagcaagtttagaaaaagaaatgaaggctgtagcaaaagaacttcaattcgaaaga
gcagctgaacttagagatgaaattaataagttaaagacaattatgaataatgactaa
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