Clostridium cellulovorans: Clocel_0386
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Entry
Clocel_0386 CDS
T01294
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ccb
Clostridium cellulovorans
Pathway
ccb03030
DNA replication
ccb03430
Mismatch repair
ccb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Clocel_0386
03430 Mismatch repair
Clocel_0386
03440 Homologous recombination
Clocel_0386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccb03032
]
Clocel_0386
03400 DNA repair and recombination proteins [BR:
ccb03400
]
Clocel_0386
Enzymes [BR:
ccb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Clocel_0386
DNA replication proteins [BR:
ccb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Clocel_0386
DNA repair and recombination proteins [BR:
ccb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Clocel_0386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
DUF6282
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ADL50166
UniProt:
D9SQ99
LinkDB
All DBs
Position
491352..494966
Genome browser
AA seq
1204 aa
AA seq
DB search
MSRDFVHLHVHTGYSLLDGSGKISLMVKRAKELGMNAMAITDHGVMYGCVEFYKAAKEVG
IKPILGSEIYVASKSMHIKEQGRKNDTHHLVLLVKNSTGYDNLMKIVSAASIDGFYYKPR
VDHDFLKKHSEGLIALSACLGGEVQGHILKSNLDIAKETALFYKETFKDGFYLELQNHGM
REQIMVNEHLIAMSKELDIPLVATNDIHYINKEDSRAHDILLCIQTGKTIDEKGRMSYQP
EQFYIRSQEEMEELFGYVEEALDNTVKIAEQCNFDYEFHVSKLPNFPLPSEQDHFQYLRD
TCYKGLAELYEEITEEIKVRLDYELDIIKTMGYVDYFLIVWDFIRFANENGIPTGPGRGS
AAGSIVAFTLGITKIDPIKYSLLFERFLNPERVSMPDIDSDFCYERRQEVIDYVVDKYGY
ESVSQIITFGTMAARMCIRDVGRAMNYSYSEVDAIAKMIPNMLGINIERALEVNSELKAA
YEENERVRDLIDVSKTLEGLPRHTSTHAAGVVIASQPLVSYVPLQKNDEAIVTQYTMGTL
EELGLLKMDFLGLRTLTVLKDAVDMVKQNKRIEIDLDKIDDADPKVYTMVGEGKTVGVFQ
LESAGMTSFMKDLKPDSLEDIIAGISLYRPGPMAEIPRYIEGKRNPAKIRYETPELEPIL
GVTYGVMVYQEQVMEIVRKLAGYSMGRSDLVRRAMSKKKHKVMEEERQNFIYGIVDKDGN
IEVPGCLRNGISVEAANKIFDQMMDFASYAFNKSHAAAYAVVAYQTAYMMCYYPTEFIAA
MLNSVMGNNEKVAYYIRFAKEKDIEVLPPHINESYSKFTVNKEKIRFGMASIKNVGGNVT
DSIVKVREEKGKFKDFMDFAEKIDVSTVNKRAAESLIKSGAFDEFGVYRSQLLAIMEKVL
DGVSSQKKRNIQGQLNLFQDFENDDSTMDIKIEYPKIKEFEKKYILAMEKEMTGLYLSGH
PLDEYVQTLNYVTNTNSSEIVSNQLLEGEEQLDNTKIRDGDKVIIGGTIAEISKKITRNN
AMMAFLRLEDLYGSVEVIIFPKTYEKVKTMLDDDALVIVSGRISIREEEAPKVLCEKIEP
LIKNSEEKLKAIFDHSKDRTKGYDSTNNRSNLKNFERSKPQISSTLVDNGRKIYIQVTDE
DGQKEAIDFLRSLPKDYRGNTRIVLFRKSDRVALNVSYELWVNEDTDIVKLLKEKFKEEN
VKEK
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgagggattttgtacatcttcatgtccatacgggttatagtcttttagatggttct
ggtaaaatatctcttatggttaaaagggcgaaggaactagggatgaatgctatggctata
actgaccacggtgttatgtatggttgtgttgagttttataaggcggctaaagaggttgga
ataaaacctattcttggctctgagatatatgttgcatcaaagtcaatgcatataaaagag
caaggaagaaaaaatgatacgcatcatttagtattacttgttaaaaacagtactggctac
gataacttgatgaagatagttagtgctgcttctatagatggattttactataaaccaagg
gttgatcacgattttttaaagaagcatagtgaggggctaattgccttgagtgcttgtctt
ggaggagaagttcaaggacatatattgaaaagtaatttagacattgcaaaggaaacagca
ttattttataaggaaacatttaaagatggattttatctagaattgcaaaaccatggaatg
cgagagcagatcatggtaaatgaacacctaatagctatgtcaaaagaacttgatattcca
ttagtcgctactaatgatatccactatattaataaggaagattctagagctcatgatatt
cttctttgcatacaaactggaaaaactattgatgaaaaaggaagaatgagttatcagcca
gagcaattctatattcgttctcaagaagagatggaagaactttttggttatgttgaagaa
gcattagataatactgttaagatagcagaacaatgtaattttgattatgaatttcatgta
tcgaagcttccaaattttccactcccttcagaacaagatcattttcaatatttaagagat
acttgctataaaggcttagcagaactctatgaggaaataacagaagagataaaagtaaga
ttagattatgaacttgatattataaagaccatgggctatgttgattattttcttatagta
tgggattttataaggtttgctaatgaaaatggtattcctactggtccagggagaggcagt
gctgctggttccatagtagcttttactttgggaatcacaaaaattgatccaattaaatac
agtttactttttgagagatttcttaatccagaaagagtaagcatgccagatatagattcc
gatttttgttatgaacgcaggcaagaagttattgattatgttgtggataaatatggttat
gagtctgtttcacagataataactttcggaaccatggcagctaggatgtgtatccgagat
gttggtagagctatgaattattcctattcagaggttgatgctattgcaaaaatgatacca
aatatgcttggaatcaatatagagagagccttagaggttaattcggaattgaaagctgct
tatgaagaaaatgaaagggttagagatctaatagatgtatcgaagactttggagggactt
ccaaggcatacctcaactcatgcagcaggagtagttatagcgtctcagcctttagtaagt
tatgttccacttcaaaagaatgatgaagcaatagtaactcagtatactatggggacacta
gaagagctcggacttttgaagatggatttcttgggactcagaaccctaactgttctaaaa
gatgctgtagatatggtgaagcagaacaagagaattgaaattgatttagataagatagat
gatgccgaccctaaagtctatacaatggttggggaaggtaaaactgtaggtgtattccaa
ttagaatctgctggcatgacttcctttatgaaagatttaaagccagatagcttagaagat
atcatagcaggaatatctctttatagaccaggtcctatggctgagattccaaggtatata
gaaggtaaaagaaatccagctaaaattagatatgaaactccagaattagaaccaatacta
ggggtaacttatggtgttatggtttaccaagaacaagtaatggagattgttagaaaacta
gcaggctattcaatggggagatctgatttagttagaagagctatgtctaagaaaaaacat
aaggttatggaagaagaaagacaaaatttcatatatggaatagtagacaaggacggaaat
atagaagtcccaggatgtttacgcaatggcatatcagttgaagctgctaacaaaatattc
gatcaaatgatggattttgctagttatgcctttaataaatcccacgctgcagcatatgca
gtagtggcgtatcaaacagcctatatgatgtgttattatcctacagaatttatagcagct
atgcttaacagtgttatgggtaataatgaaaaagttgcttactatattaggtttgcaaag
gaaaaagatatagaagtacttccaccacatataaatgaaagttattctaagtttactgta
aataaggaaaagatacgctttggtatggcttcaataaagaatgttgggggaaacgtaaca
gatagtatagttaaagtcagagaagaaaagggaaaattcaaggattttatggattttgcc
gaaaaaatcgacgtatctactgttaataaaagagctgcagaaagcttgataaaatctgga
gcttttgatgagtttggagtctatagatctcaacttttagctataatggagaaagtttta
gacggagtgtcaagccaaaagaaaagaaatattcaagggcaattaaacttgttccaagat
tttgagaatgatgattcaaccatggatattaaaatagagtatccgaagataaaagaattt
gaaaagaagtacattctagctatggaaaaggaaatgacgggtctttatttaagtggtcat
cctttagatgaatatgttcaaaccttaaactatgtaactaacaccaattctagtgagatt
gtatcaaatcaacttttagaaggcgaagagcagttagataatactaaaattagagatgga
gataaggttataataggtggaaccatagctgaaatatctaaaaagataaccagaaacaat
gccatgatggcatttttgagacttgaggatttatatggttccgtagaagttattattttt
cctaagacctatgaaaaagtaaaaactatgcttgatgatgatgctcttgttattgtatcg
ggaagaataagtataagagaagaagaagcgccaaaggttctatgtgagaaaattgagcct
ttgattaagaatagtgaagaaaaattaaaagctatttttgatcattcaaaggataggact
aaaggatatgattctactaataatagaagtaatttaaagaattttgagagaagtaagcct
caaataagttcgacacttgttgataatggaagaaaaatatatatacaggtaactgatgaa
gatggacaaaaagaagccatagactttttaagatctttacctaaagattatagaggaaat
acaagaatagtactttttaggaagtctgacagagtagctcttaatgtcagttatgagctt
tgggttaatgaagatacagacattgtcaagttattgaaagaaaaatttaaagaagagaat
gtaaaagagaaataa
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