Clostridium cellulovorans: Clocel_1024
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Entry
Clocel_1024 CDS
T01294
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccb
Clostridium cellulovorans
Pathway
ccb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clocel_1024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccb03019
]
Clocel_1024
03009 Ribosome biogenesis [BR:
ccb03009
]
Clocel_1024
Enzymes [BR:
ccb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Clocel_1024
Messenger RNA biogenesis [BR:
ccb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Clocel_1024
Ribosome biogenesis [BR:
ccb03009
]
Prokaryotic type
rRNA helicases
Clocel_1024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADL50787
UniProt:
D9STU9
LinkDB
All DBs
Position
complement(1257854..1258978)
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AA seq
374 aa
AA seq
DB search
MNFKELGINEALVKILKDTGITEPTPVQSESIPHIKAGGDLIGEAQTGTGKTLAFLLPIF
ENISPTVNNVQALILTPTRELAIQITNQALKLKEGKDINILAAYGGKDIGSQLKKLKNNI
HLIIATPGRLLDHIERKTVDLSKLKTFVLDEADQMLLMGFKNEVESIIKVTSKKRQTLCF
SATLNSDVKKLAYRYMNDPITVTIKKEEVTLSTIKQHVVETTDRRKQNALCAVLDEDNPF
MAIIFCRTKRRADDLEVGLYQRGYNCAKLHSDIPQSKRERIMKAFRNADFQYLIATDVAA
RGLDISGVTHIYNYDIPESVESYIHRIGRTGRAGEEGYTCLFIDPKNNDMLEEIEEALKF
QIPRRQVDDSFKKD
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaactttaaagaattaggcattaatgaagccttagtaaaaatactaaaggatactggt
atcactgaaccaactccggttcaaagtgagagcatcccacatataaaagctggcggagat
cttataggcgaagcgcaaacaggtactggaaaaactcttgcatttttgcttccgattttc
gaaaatatctcccctactgtaaataacgttcaagctttaatattaactcctacaagagaa
cttgctattcagataacaaatcaagctctaaagcttaaagaaggtaaagatataaatata
ttagcagcctatggtggtaaagatataggctctcagcttaaaaagcttaagaacaatatc
caccttatcatcgctacacctggcagacttttagaccacattgaaagaaaaactgtagat
ttaagcaagctgaaaacctttgttttagatgaagcagaccaaatgcttttgatgggcttt
aagaatgaggtggagtcaatcattaaagtaacctctaaaaagcgtcaaaccctttgcttt
tctgcaacgctaaattctgacgtaaaaaaattagcttatagatatatgaatgacccgata
acagttacgataaaaaaggaagaagttactcttagcactattaagcaacatgtggtggaa
actactgatagaagaaagcaaaatgctttgtgtgctgtccttgatgaagataatcctttt
atggctattatattttgcagaacaaaaagaagagccgatgaccttgaagtaggtctttat
caacgtggctataattgtgcaaaacttcacagtgatataccacaatcaaagcgtgaacga
ataatgaaagcttttagaaatgctgattttcaatacttgatagctactgatgtagctgct
agaggtcttgatataagtggagtaactcatatatataattatgatatccctgaaagtgtg
gaaagctatattcatcgtataggtagaactggaagggctggcgaagagggttatacttgc
ttgtttatcgatccaaagaataatgatatgttagaagaaatcgaggaagcgcttaagttt
cagataccaagaagacaagtggatgatagttttaaaaaggactaa
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