Clostridium cellulovorans: Clocel_1351
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Entry
Clocel_1351 CDS
T01294
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccb
Clostridium cellulovorans
Pathway
ccb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clocel_1351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccb03019
]
Clocel_1351
03009 Ribosome biogenesis [BR:
ccb03009
]
Clocel_1351
Enzymes [BR:
ccb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Clocel_1351
Messenger RNA biogenesis [BR:
ccb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Clocel_1351
Ribosome biogenesis [BR:
ccb03009
]
Prokaryotic type
rRNA helicases
Clocel_1351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
AAA_22
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ADL51104
UniProt:
D9SVI0
LinkDB
All DBs
Position
complement(1659268..1660878)
Genome browser
AA seq
536 aa
AA seq
DB search
MTKIKTFNELNLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFG
SIILNNMSEKRRVPQALILAPTRELAIQVNEELVRIAKNMRLNILPIYGGQPIDRQLRAL
RNGVDIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNEDRQ
TLLFSATMPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCRIID
ADEPEAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFLVA
TDVAARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLKQIE
KTTKSKIKRNSVPTVDEIYDVKYKNVLNKVRDTIENEDLSKFIPYATELDDDYSLVDVAA
ALMKIAFSNELAYEYTTNALEVPEPMRNSSARGASRGQKRLFVSAGRRDNVSPKELVQFF
KDSSRIQPRQIGDIAIMENFSFVNVDTSIVDDILKFSSGKRLKGRKINIEVAKERR
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaattaaaacatttaatgaattaaaccttaaagacgaaatccttaaggcaatc
aacgacatgggttttgaagagccctcaccaattcaaagtgaaagtatacctgtgggcata
gaaggctatgatcttataggtcaagcacaaactggtactggtaaaactgccgctttcgga
agcatcatccttaacaatatgagtgaaaagagaagagtacctcaagctttaatcttagca
cctactcgtgaacttgctattcaagtaaatgaagaacttgtaagaatagctaaaaacatg
agattaaatattcttcctatatatggtgggcaaccaatagacagacagttaagagcactt
agaaacggtgtagatatagtagtaggaacacctggaagagttcttgatcacttaagaaga
aaatcattaaacactgaatttgttaagtttctagtacttgatgaagctgacgaaatgcta
aacatgggctttattgatgatattgaagaggttatgaaatcacttaacgaagatagacaa
acccttttattctcagcaacaatgccagacgctataaaaagactttctaaacgctatatg
aaatcagatgcaaaattaatctctattgagaaaaacacagttactgcatcaacaataact
caatattattatgaaattaagaattctgaccgttttgaatctttatgtagaataatagat
gctgatgaaccagaagctgctattatcttctgtaaaacaaaaaaaggtgttgacgaatta
gtttcttcgatgcaaagaagaggatacgttgttgaaggcatgcacggagatatgaaccaa
aatcaaagaatgaataccttaaagaaatttaaagaatcaaacttagatttcttagttgct
acagacgtagctgcaaggggtattgatgttgaaaatgtaactcatgttataaattacgac
cttcctcaagatgctgaaagttatgttcatagaatcggaagaactggaagagctaacaaa
gaaggtaaagcttatacccttgttactccaagagaatatattgtcttaaagcaaattgaa
aaaacaacaaaaagtaagatcaaaagaaactctgtccctacagtggatgaaatatatgat
gttaaatacaaaaacgtcttaaacaaagttagagacactatagaaaatgaagatttatct
aagtttatcccttatgctacagaacttgatgatgactatagcttagtagatgttgctgca
gcattaatgaaaatagctttttcaaatgaattagcttacgaatacactaccaatgcttta
gaagtacctgaaccaatgagaaattcaagtgcacgtggtgcttctagaggacaaaaacgt
ctattcgtttctgcaggaagacgtgataatgtatcaccaaaagaattagttcaattcttc
aaggattcatctagaattcaaccaagacaaattggtgatattgcaataatggaaaacttt
tcatttgtaaatgtagatacttccatagtagatgatatactaaagttttcatctggtaaa
agattaaaaggtagaaaaattaatattgaagttgcaaaagaaagaagatag
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