Clostridium cellulovorans: Clocel_2371
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Entry
Clocel_2371 CDS
T01294
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ccb
Clostridium cellulovorans
Pathway
ccb03410
Base excision repair
ccb03430
Mismatch repair
ccb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Clocel_2371
03430 Mismatch repair
Clocel_2371
03440 Homologous recombination
Clocel_2371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccb03400
]
Clocel_2371
DNA repair and recombination proteins [BR:
ccb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Clocel_2371
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Clocel_2371
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Clocel_2371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Pox_VLTF3
Synaptonemal_3
Motif
Other DBs
NCBI-ProteinID:
ADL52087
UniProt:
D9SPV1
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All DBs
Position
complement(2806177..2807946)
Genome browser
AA seq
589 aa
AA seq
DB search
MTKAAQKLATDSFISPIIAKLLWDRGIRDKDEVEKFLKGSIDEMYDPFLMKDMDLATSII
IKAIFEEKKIVIYGDYDVDGVTSTVIMFKALKRVGARVTYHIPDREKEGYGLNKKSIEVL
REQGNSVIITVDNGIAAVEEVKYAKEIGFQVVITDHHDLPFEENEKGERKEILPNADAII
NPKRSDCNYPFKYLCGASIAFKFAVALFIKRKIDYKEAYNEYLQFAGIATVCDVVDLIDE
NRVILKNALKSINNSKNIGINSLRKFTLSLDKEISVYAIGFVMGPCINATGRLENAKMAV
ELLLTKELEIAENLAKELVDLNKTRQDMTTEGVEKVVKEIELGDYYNDKVLVVYEPTIHE
SIAGIIAGRIREKYNKPTIILTKAVEGVKGSARSIEEYNIYEELLKCKNLLDKFGGHPMA
AGMSLKEENIEPLRETLNGKCILTDEDMIPKVVIDFPLSSHKIDDSIIYDIGELAPFGKG
NSTPLFGDKNLLLEKAMVFGSDNGVLKLVFNVQGRRIDAVAFKKYLELMEIIEENWVNDN
YGELLPYSTGYLINIPQDLRLDIIYTPEFNEYKGNKKIQLKVHELRISK
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaggcagctcagaaattagcaacggattcttttatttctccaattatagcaaag
ttattgtgggacaggggaattagagataaagatgaagttgagaagtttttaaaaggaagt
atagatgagatgtatgatccatttctcatgaaagatatggatttagctacatcaataatt
ataaaagctatttttgaagaaaaaaaaatagtaatatacggtgattatgatgttgatggc
gttactagtactgtgataatgtttaaggctttaaaaagagttggtgctagagttacttat
cacatccctgatagagagaaagaaggctatggattaaataaaaaatctatagaggtctta
agggaacaaggaaattcagtaattataacagtagataatggaattgctgctgttgaagaa
gtaaaatatgctaaggaaattggattccaagttgtcataacggaccatcatgacttgcct
tttgaagaaaatgaaaaaggtgagagaaaagaaatattgcctaatgccgatgctataata
aaccccaaaagaagcgattgtaattatccttttaaatacttgtgtggtgcatcgatagca
tttaaatttgcagttgctctatttataaaaagaaagattgactataaagaagcttataat
gaatatctgcaatttgcaggtattgcaacagtgtgtgatgtagttgatttaattgatgaa
aatagggttattctaaaaaatgcattgaaatccataaataatagtaaaaatattggaatt
aattcattaaggaagtttacgttaagtttagataaagaaatttctgtttatgccatagga
tttgttatgggaccttgtataaatgctacaggtaggcttgaaaatgctaaaatggcagtt
gagttactattaacaaaagaattggaaatagccgagaatttggccaaagaacttgttgat
ctaaataaaacaagacaagatatgaccactgaaggtgttgaaaaagttgttaaagaaatc
gaattaggtgattattataatgataaagtacttgtggtttacgaaccgacaattcacgaa
agtattgctggaataattgctggtaggataagagaaaagtataataaacctacaataatt
ttgacaaaagctgtagaaggggttaaaggctccgcaaggtccattgaggaatataatatt
tacgaagaattattaaagtgtaaaaatcttttagataagtttggaggacatcccatggct
gcaggaatgtctctcaaagaagaaaatattgagcctttaagagagacactaaacggcaag
tgcattcttactgatgaagatatgataccaaaggttgttattgatttcccactaagttca
cataagatagatgatagcattatttatgatataggtgaacttgctccttttggcaaaggc
aatagcacacctttatttggagataagaatcttttattagaaaaggcaatggtctttgga
agtgataacggagttttaaaactagttttcaatgttcaaggaagaaggattgatgcagta
gcctttaaaaaatatctagaattaatggaaataatagaagaaaattgggtaaatgacaat
tatggagaacttttaccatatagtactggatatttaataaatataccacaagatttaaga
ttagacataatatatacccctgaatttaacgaatataaaggaaataagaaaattcaactc
aaggtacatgagttaagaatatcaaaataa
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