Clostridium cellulovorans: Clocel_2858
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Entry
Clocel_2858 CDS
T01294
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccb
Clostridium cellulovorans
Pathway
ccb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clocel_2858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccb03019
]
Clocel_2858
03009 Ribosome biogenesis [BR:
ccb03009
]
Clocel_2858
Enzymes [BR:
ccb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Clocel_2858
Messenger RNA biogenesis [BR:
ccb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Clocel_2858
Ribosome biogenesis [BR:
ccb03009
]
Prokaryotic type
rRNA helicases
Clocel_2858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Flavi_DEAD
AAA_30
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ADL52554
UniProt:
D9SSA7
LinkDB
All DBs
Position
3521668..3523086
Genome browser
AA seq
472 aa
AA seq
DB search
MINFKDFNLNESMLKSLKLMNFDVPTEVQEKVIPLALSGDDIIVKAQTGSGKTAAFAIPI
IENLIANENAVQALVLTPTRELAVQVQETFSTLGVYKKIKTVAVYGKQPMSIQKNQLSQR
VHIVVGTPGRTLDHIEKGNLDISSVKYLIIDEADEMLNMGFIDEVENIIKKVPKLRQTLM
FSATLSYEIKELINKYMFSPKLIELTPETLTVAKINQKYYEIDENLKYNLLEDLIKTEDI
TKAILFCRTKKNVAYLASRMRVSSYSVTEIHGDMLQNDRLSALKAFKEDKFQFIVATDVA
ARGIDVNNVSHVFNYDIPLELEAYVHRIGRTGRAGSSGEAITFVTRYEDKFLKAIEEFIN
MKIPQGIHPSKEEVLNAPKKEFKPSVAKINNKSSDIIKIHINGGKKKKIRRGDIVASLIH
SGGVPADDIGVIDIFDTYSYVDILNGSGKKLLSMHPEINLKGKSIKIQRAKK
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgataaactttaaagattttaatttaaatgagtcaatgttaaaatcactaaaattaatg
aactttgatgtacctacagaagtacaagaaaaggtcattcctttagccctgagtggtgat
gatataatagtaaaagctcaaacaggcagcggaaaaactgcagcttttgctattccaatt
attgaaaacttaattgctaatgaaaatgccgttcaagccttagttcttactccaacaaga
gagctagcagttcaagttcaagagactttctctactcttggagtttacaagaagataaaa
actgtagctgtatatggtaaacaacctatgagcattcaaaaaaatcaattatctcaaaga
gtccatattgtagttggaacccctggcagaaccctagaccatattgaaaaaggtaatcta
gatattagttctgttaagtatttaataattgatgaagctgatgaaatgctgaatatggga
tttatagatgaagttgaaaatatcataaaaaaagtgccaaagctaagacaaacattaatg
ttttcagcaaccttatcttatgaaataaaagaacttataaataaatatatgttttcacca
aaacttattgaacttacacctgagactcttactgtagcaaagataaatcaaaagtattac
gaaatagatgaaaatttgaaatataacctactagaggatttaattaagactgaggatatc
acaaaagctattctattttgcagaacaaaaaagaatgttgcttatttagcttctcgaatg
agagtttcttcttattcggtaacagaaattcacggtgatatgcttcagaatgatagactt
tctgcgttaaaagcttttaaagaagataagtttcagtttattgtggcgacggatgttgct
gctaggggcattgatgttaataacgtcagtcatgtatttaactacgatattccccttgaa
ctagaagcctatgtacatagaatcggcagaactggaagagctggttcatctggtgaggcc
attacctttgtaactaggtatgaagataaatttcttaaggctatagaagaatttataaat
atgaaaatccctcaaggaatacacccttcaaaagaagaggttcttaatgctccaaaaaaa
gaattcaagccttccgtagctaaaataaataataaatcttcagatataataaaaattcac
ataaacggtggaaaaaagaaaaagatccgccgtggtgatattgtagcttctcttatccat
agtggtggagtaccagcagatgatattggagttattgatatttttgatacctacagctat
gtagatatattaaacggttctggtaaaaagcttctttctatgcatcctgaaatcaattta
aaaggaaagtctataaaaatacaaagagctaaaaaataa
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