Clostridium cellulovorans: Clocel_3404
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Entry
Clocel_3404 CDS
T01294
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccb
Clostridium cellulovorans
Brite
KEGG Orthology (KO) [BR:
ccb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccb03016
]
Clocel_3404
Enzymes [BR:
ccb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Clocel_3404
Transfer RNA biogenesis [BR:
ccb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Clocel_3404
Prokaryotic type
tRNA splicing ligases
Clocel_3404
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADL53083
UniProt:
D9SVM2
LinkDB
All DBs
Position
complement(4166688..4167911)
Genome browser
AA seq
407 aa
AA seq
DB search
MKIVQGKYNTAKVFTNNIAEEAIEQLVELCNQPFVEGCKVRIMPDTHKGSGCVIGFTADL
GDKVIPNIVGVDIGCGMLTVNLGKVDLDLEMLDKVINKYIPSGKNTHEGRTVRFEKLQDL
KCFRDLKNTKRIERSIGTLGGGNHFIEVDKGDDGTVYLVIHSGSRNLGTQVADLYQNLAI
DLCSGKEDYFIKRDEIIKNFKECGKRKEIEKELKFLKKNYDQLNPVYPRDLCFLTGKYRE
EYLHDMNICQEYATLNREVMAEIILNKLLGKSLKEFQAFTTIHNYINFKDNIIRKGSISA
YEGEKLLIPINMRDGSLICVGKGNEDWNYSAPHGAGRLMSRTKAKEKVDYEEFKKSMEGI
YSTTVTEATIDEAPMVYKPMKEIIENIVETVEIIDIIKPIYNFKAQG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatagtacagggtaagtataatactgcaaaagtatttacaaataatatagcagaa
gaagcaattgaacaattagttgagctttgcaaccaaccttttgttgaaggctgcaaggtt
agaataatgccagatacccataaaggatcaggctgtgttataggttttacagcagattta
ggagataaggtaattcctaatattgttggagtggacataggttgtggcatgctgacagtt
aatcttggtaaagttgatttagatttagaaatgttagataaagttataaataaatatata
ccatcaggtaaaaacactcatgaaggtagaactgttagatttgaaaagttgcaagattta
aaatgtttccgagatttaaaaaatacaaagagaatagagcgaagcataggaactctaggt
ggaggaaaccactttattgaggttgataaaggggacgatggcactgtttatttagtaatt
cattcaggaagtagaaatttaggtacacaagttgcagatttatatcagaatttagctata
gatttatgttctggtaaagaagattattttattaagagagatgaaattatcaagaacttt
aaagaatgtggaaagagaaaagaaatagaaaaggaattaaagtttttaaaaaagaactat
gatcagttaaatccagtttacccaagagatttatgctttttaactggaaagtatagagaa
gaatatcttcatgatatgaacatatgtcaagaatacgcaacactaaatagagaagttatg
gcagagattattcttaataagcttttaggcaagagtttgaaagagtttcaggctttcact
actattcataattatattaatttcaaagataacattataagaaaaggtagtatttcagct
tatgaaggagaaaagctacttattccaataaacatgagagatggaagccttatttgtgtt
ggaaaaggtaatgaggattggaattattctgcaccacatggagctggaagattaatgagt
agaacaaaagccaaagaaaaggttgattatgaagagtttaaaaaatctatggagggaata
tattctacaactgttacagaggcaacaatagatgaagctccaatggtatataaaccgatg
aaagaaattatcgaaaatattgtcgaaactgtggagattattgatataattaaaccaata
tataattttaaagctcaaggataa
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