KEGG   Clostridium cellulovorans: Clocel_3704
Entry
Clocel_3704       CDS       T01294                                 
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
ccb  Clostridium cellulovorans
Pathway
ccb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ccb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Clocel_3704
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccb03021]
    Clocel_3704
   03400 DNA repair and recombination proteins [BR:ccb03400]
    Clocel_3704
Enzymes [BR:ccb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Clocel_3704
Transcription machinery [BR:ccb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Clocel_3704
DNA repair and recombination proteins [BR:ccb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Clocel_3704
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L
Other DBs
NCBI-ProteinID: ADL53374
UniProt: D9SX71
LinkDB
Position
complement(4487207..4488154)
AA seq 315 aa
MLEIEKPKIECVESTEDGSYGKFVIEPLERGYGITLGNSLRRILLSSLPGVAANSIKIDG
VLHEFSTVKGVKEDVTELILNVKPLALKMNGEGPKTIYIDAQGPAVVTAADIITDDSVEV
ISKDLHIATLDEDGRLQMEIEVNSGRGYVTQNKNKRDDMPIGTIAIDSIYTPITRVNFTV
ENTRVGQITDYDKLTLEVWTNGTIRPEEAISLSSKILIEHLKLFMTLTDNADNVEIMVEK
EEDKKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELTERSMDDMMKVRNLGKKSLEEVD
QKLTALGLGLKLNDE
NT seq 948 nt   +upstreamnt  +downstreamnt
atgttagagatagaaaagcccaaaatagaatgtgtggaatccactgaagatggttcttat
ggcaaatttgttatagaacctcttgaaagaggatatggtattactttaggaaattcttta
agaagaatattactatcttctcttccaggtgttgcagcaaattctattaaaatagatgga
gtacttcatgagttctcaacagttaaaggtgttaaagaagatgttactgagcttatactc
aatgtaaaacctcttgcattaaaaatgaatggagaaggaccaaaaactatatatatcgat
gctcaaggcccagctgtagttactgcagcagacattatcacagatgatagtgttgaggtt
ataagcaaagatttgcatatagctactttagatgaagatggaagactccaaatggagata
gaagttaatagtggaagagggtatgttactcagaataaaaataagagagacgacatgcca
attggtacaatagctattgattctatttacactccaataactagagttaattttactgtt
gaaaatacaagagtaggtcaaattactgactatgataaactaactttagaagtatggaca
aatggaaccataagaccagaagaagctattagtctttcttcaaaaattcttatcgaacac
ttaaaactattcatgacattaactgataatgcagataatgttgaaataatggttgaaaaa
gaagaagataagaaagaaaaagttttagaaatgacaatagaagagcttgatttatcagtt
agaagctataactgcttaaagagagcaggaataaacacagttcaagaactaactgaaaga
agcatggatgacatgatgaaggttagaaatcttggtaagaagtctttagaagaagttgac
caaaagcttacagccctaggcttagggttaaagcttaacgatgagtaa

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