Clostridium cellulovorans: Clocel_3740
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Entry
Clocel_3740 CDS
T01294
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccb
Clostridium cellulovorans
Pathway
ccb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Clocel_3740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccb03021
]
Clocel_3740
03400 DNA repair and recombination proteins [BR:
ccb03400
]
Clocel_3740
Enzymes [BR:
ccb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Clocel_3740
Transcription machinery [BR:
ccb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Clocel_3740
DNA repair and recombination proteins [BR:
ccb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Clocel_3740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ADL53410
UniProt:
D9SXA7
LinkDB
All DBs
Position
complement(4507836..4511354)
Genome browser
AA seq
1172 aa
AA seq
DB search
MELNNFDALQIRLASPEKIREWSRGEVKKPETINYRTLKPEKDGLFCERIFGPMKDWECH
CGKYKRVRYKGIVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDMS
PRALEKILYFASYVVLKPKETPLLKKQLLTEKEYREAIDKYGYDSFEAGMGAESVKVLLE
ELDLESLSKELKEELIQSSGQKKVRIIRRLEVVESFRKSGNKPSWMISDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAADALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKE
MALELFKPFVMKKLVESNAAHNIKSAKRMVERVQPQVWDVLEEVIQDHPVLLNRAPTLHR
LGIQAFQPVLVEGRAIKLHPLTCSAYNADFDGDQMAVHLPLSVEAQAEARFLMLAAHNIM
KPSDGKPVSVPTQDMVLGSYYLTLEKEGAKGEGKFFTNTDEVLMAYQNGDIAINARIKVR
LQKVIDGKVIKGNIETTCGKIIFNESIPQNLGFVDRTIPGNELKLEIDFLVSKKNLGNII
EKCYQKYGPTKTSTMLDKIKATGYHYSTIGAITVSTSDMTVPPQKKELMHEAETTVDKIE
KMFRRGFISEDERYEKVIEKWTETTEKVADALMANLDKFNPIFMMADSGARGSKSQIKQL
AGMRGLMASPSGKIIERPIKSSFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRRL
VDVSQDVIVRSEDCGDDEGFEVVEIKEGNEVIEPLHERLAGRYMAEDVVDPESGEVLAAK
NSYVDVPLAEKIEKRGVKKVRIRSVFTCKSKHGVCAKCYGMDMATGQKVNIGEAVGIVAA
QSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIVSEIAGTVKYEETK
KKRTVIVVGNDGEEATYDIPFGSSIRVVNGDVIEAGDEITQGSVNPHDIIRIKGVKAVKN
YLLSEVQKVYRLQGVDINDKHLEVVVKQMTRKVKIDDSGDTELLPGTMIDMYDYAEVNEN
AIANNQEPAKGIVSLLGITKAALATDSFLSAASFQETTRVLTDAAIKGKVDPLLGLKENV
IIGKLIPAGTGMKRYKNISIDVARETEIAIEE
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
ttggaattaaataattttgatgcattacaaattagattggcttcacctgaaaagattaga
gagtggtcaagaggtgaggttaaaaaaccagaaacaataaactatagaactctaaaacca
gaaaaggatggtttattctgtgaaagaatattcggaccaatgaaggattgggagtgtcat
tgtggtaagtataaaagagttagatataaggggattgtttgtgaccgttgcggagttgag
gttacaaaatcaaaagtaagacgtgaaagaatggggcatatagaacttgctgccccagtt
tctcacatttggtattttaaaggtattccatcaagaatgggattaattttagatatgtct
ccaagagctcttgaaaagattttatactttgcatcttatgtagtattaaagccaaaggaa
accccattattaaagaaacaacttctaactgagaaggaatatagagaagcaattgataag
tacggatacgatagctttgaagcaggtatgggtgcagaatcagttaaagtacttctagaa
gaacttgacttagaaagcctatctaaagaacttaaagaagagttgattcaaagttcagga
caaaagaaggttagaattatcagaagacttgaagttgtagaatcttttagaaagtctggt
aataagccatcttggatgataagtgatgtaataccagttataccaccagatttaagacca
atggttcaattagacggtggaagatttgctacatcagatttaaatgacttatatagaaga
gttataaatagaaataacagacttaaaaagcttcttgatttaggagcaccagatataata
gttagaaacgagaagagaatgcttcaagaagcagcagatgctctaatcgataatggtaga
agaggtagaccagttacaggaccaggaaataggcctcttaaatctttatcagatatgctt
aaaggtaagcaaggtagatttagacaaaaccttcttggaaaacgtgttgactactcaggt
agatctgttattgttgttggaccagaacttaagatgtatcaatgtggtcttccaaaggaa
atggcacttgaattattcaaaccatttgttatgaagaagttagttgaaagtaatgctgct
cacaatattaagagtgctaagagaatggttgaaagagttcagccacaagtgtgggatgtc
ttagaagaagttattcaagatcatccagtactacttaaccgtgcgcctacgcttcataga
cttggtattcaagctttccaaccagtactagttgaaggaagagctataaaacttcaccca
cttacatgttcagcatataatgctgactttgatggtgaccagatggctgttcacttacct
ttatctgttgaggctcaagctgaagctagattcttaatgttagcggctcataatataatg
aagccatctgatggaaagccagtttcagttcctactcaggatatggttttaggatcatat
tacttaactctagaaaaagaaggagctaagggagaaggtaaattctttactaacactgat
gaagtattaatggcttaccaaaatggagatatagctattaatgcaagaattaaagtaaga
ctgcaaaaagtaattgatggtaaggttataaaaggtaatatagaaactacttgtggtaag
ataatttttaatgaatcaattcctcaaaatttaggttttgttgatagaacaattccaggt
aatgagttgaaattagaaatagatttccttgtaagtaaaaagaatttaggaaatattata
gaaaaatgttatcaaaaatatggaccaacgaaaacatcaacgatgcttgataaaatcaaa
gctacaggatatcactattcaacaataggagctatcacagtttctacttcagatatgaca
gttccacctcaaaagaaggaattaatgcatgaagcagaaactactgttgataagattgaa
aagatgttcagaagaggttttatttcagaagatgaaagatatgaaaaagttatagaaaaa
tggactgaaactactgaaaaggttgcggatgcacttatggctaaccttgataagttcaat
ccaatattcatgatggcagattccggagccagaggttctaagtctcagattaaacaactt
gcaggtatgagaggacttatggcgagcccatcaggtaaaatcatagaacgtccaatcaaa
tcttccttcagagaaggtctagacgtattagaatactttatatctactcacggagctaga
aaaggtaacgccgatacagcactaaaaacggctgactcaggttacttaacaagaagactt
gttgatgtaagccaagatgttatcgtaagaagtgaagattgtggtgatgatgaaggtttc
gaagtagtagaaatcaaagaaggaaatgaagtaatcgaaccattacatgaaagattagct
ggtaggtatatggctgaagatgtagttgatccagaaagtggagaagtacttgcagctaaa
aattcttatgttgatgttcctcttgctgaaaagattgaaaaaagaggagtaaagaaagta
agaataagatctgtatttacatgtaaatctaaacatggagtttgtgcaaaatgctatggt
atggatatggctacaggtcaaaaggttaatataggtgaagcggttggtatagtagcggct
caatctatcggtgaaccaggtactcagcttacaatgagaacgttccatactggtggtgtt
gccggagccgatataactcaaggtcttcctagagttgaagaattgttcgaagctagaaag
ccaaagggtcttgctattgtaagtgagattgcaggtacagttaaatacgaagaaactaaa
aagaagagaactgtaattgttgttggcaatgatggtgaagaagcaacatatgatattccg
tttggatcatcaataagagtagttaatggtgatgttatagaagctggtgatgaaataaca
caaggttctgttaacccacatgatataatcagaattaagggtgtcaaagctgttaagaat
tacttattatcagaagttcaaaaggtttatagactacaaggtgttgatatcaatgataag
catcttgaagttgtagtaaaacaaatgacaagaaaagttaagatagatgattctggggat
actgaattgttaccaggaacaatgatagatatgtatgattatgctgaagtaaatgaaaat
gcaatagcgaataatcaagaacctgcaaaaggaatagtttcccttttaggtatcacaaaa
gctgctcttgctacagattcattcttatcagctgcatcattccaagaaacaactagagtt
cttactgatgctgcaataaagggaaaagtagatccattattaggattgaaggaaaatgta
attatcggtaagttaattccagctggaacaggaatgaagagatataagaacataagtatc
gatgttgcacgagaaacagaaatcgcaatagaggaatag
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integrated database retrieval system
