Campylobacter coli CVM N29710: G157_02865
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Entry
G157_02865 CDS
T02838
Name
(GenBank) phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ccc
Campylobacter coli CVM N29710
Pathway
ccc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G157_02865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccc03019
]
G157_02865
Messenger RNA biogenesis [BR:
ccc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G157_02865
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
KH_2
KH_KhpA-B
dUTPase
MurD-like_N
EMC3_TMCO1
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
AGV09687
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All DBs
Position
complement(574955..576508)
Genome browser
AA seq
517 aa
AA seq
DB search
MIESLIALITAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAIEYEAELILKDAKNSIL
NAELEVKKKYEDKTHKIQKEFNQKFDELSKKEQKLQLQEESLKENQEELLRSKKQMLDLQ
SDADKLKKQYQTKLNDVLNILEHSAGLTQDEAKNIILEKVEENSRNEIAHIVRRYEEEAR
NEAKRKANYIIAQATSRFAGEFAAERLINVVNIKNDELKGRIIGKEGRNVKTLEMVLGVD
IIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRIQPARIEEIHEKVCKEFDNAILEEG
ETILMDLGLSKVHPEITKLIGKLKYRASYGQNALAHSLEVAHLAGIIAAECGGDENLARR
AGILHDIGKALTHDFEGSHVDLGAELCKRYKEHPVVINAIYAHHGHEEATSIESAAVCAA
DTLSAARPGARREVLEAFLRRVSELEEIAKSKEGIKNAYAINAGREIRVIANAKLVNDDE
SVLLAKEIAAEIQEKMQYPGEIKVNVIRELRAIEYAK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgatagaatcacttatcgcacttataaccgctatagtcggtcttggaataggatattta
gttgcaaaaaaaatcaatgatgctaaatatgaaatttttgttgagcaagcaaaagcgaaa
gcaaaagctatagaatacgaagctgaactgattttaaaagatgccaaaaattcaatcctt
aatgccgaacttgaagtgaaaaaaaaatacgaggataaaactcacaaaattcaaaaagaa
ttcaatcaaaaatttgatgaattatccaaaaaagagcaaaaacttcaacttcaagaagaa
agcttaaaagaaaatcaagaagaattattacgctctaaaaaacaaatgcttgatttacaa
tcagatgctgacaagcttaaaaaacaataccaaacaaaactcaatgatgttttaaatatt
ttagaacattcagcagggctcactcaagatgaagcaaaaaatatcattcttgaaaaagta
gaagaaaactcacgcaatgaaattgctcatatcgttaggagatatgaagaagaggctaga
aatgaggctaaaagaaaggcaaattacatcatagcacaagcaacctctcgttttgcagga
gaatttgctgctgaaagacttattaatgttgtcaacatcaaaaacgatgagttaaaaggg
cgtatcataggcaaagaaggacgcaatgttaaaaccttagaaatggttttaggagtagat
atcatcatcgatgatacacctggagccatcatagtaagttgctttaatctttatcgccgt
gctattgcaactaaggtgattgaacttttagtagaagatggaagaattcagcctgctcgc
atagaagaaattcacgaaaaagtatgcaaagaatttgataatgctattttagaagaaggt
gaaactatactgatggacttagggctttctaaggtccatccagaaatcaccaaacttata
ggaaagcttaaataccgcgcaagctatggacaaaatgctttagcacattctttagaagta
gctcatttggcaggaatcatcgctgctgagtgtggaggggatgaaaatttagcacgacgc
gcaggaattttacacgacataggcaaagctttaacgcatgattttgaaggctctcatgta
gacttaggagcagaactttgcaaacgctataaagaacatcctgtggttattaatgctatt
tatgctcaccatggacatgaagaagctacaagcatagaatcagcagccgtttgcgcagct
gatacgctcagcgctgcaagaccgggtgctagacgcgaagtcttagaagctttcttaaga
agagtaagcgagcttgaagagattgctaaaagcaaagaaggtattaaaaatgcttatgcg
attaatgcgggaagagaaattcgtgtcattgcaaatgcaaaacttgtaaatgatgatgaa
agcgtgcttttagccaaagaaatagctgctgaaattcaagaaaaaatgcaataccctgga
gaaatcaaggtaaatgtcatacgcgaactaagagccatagaatacgccaaataa
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