Campylobacter coli CVM N29710: G157_03985
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Entry
G157_03985 CDS
T02838
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ccc
Campylobacter coli CVM N29710
Pathway
ccc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ccc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G157_03985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccc03021
]
G157_03985
Transcription machinery [BR:
ccc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G157_03985
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
Sigma70_r4_2
MCR_beta_N
Motif
Other DBs
NCBI-ProteinID:
AGV09905
LinkDB
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Position
complement(801921..803786)
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AA seq
621 aa
AA seq
DB search
MNAKTQDMELEELFKENEKDYITYEKLVKYFSKQPNSATAKKVQTLMKKYKVQLFSAAEI
AQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRSDSPVRMYLREMGQIALLN
KDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYREPLINRERRVKELFKSFDDEEKND
DKLDELEDEDEENDEELENEEETPKKTSKKEDERTLKVIEKFKALEKAKKDWLKVSKDKE
SGDEILDKLGIAFKKNILKEKLMDLGPTSKLISEIVKSMETALKSDEEFDKELKRLEYRL
PMFSEELKNRHANILKDITKLSKEEITERALETTMVSTYMEIKKLFQTKEASEKSFDLEK
ERLKEILEQIKRGKKISDEAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKA
VDKFEYKRGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINQINKIIREHLQKDG
KEPDVSVIAKEVGLSVDKVKQVIKITKEPISLEAPIGSEDDGKFGDFVEDRNSLSPMDHI
LKDDLKEQIDEVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSA
IKKLKHPKVGRKLKNYIEGWK
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccaaaacccaagatatggaacttgaagagctctttaaagaaaacgaaaaagat
tatatcacttacgaaaaattagtaaaatacttcagcaagcaacctaattcagccactgcc
aaaaaagtccaaactttaatgaaaaagtataaagtacagttattttcggctgctgaaatt
gcacaaatgaaaaatatagaagatgcaaaaagattgcaagaagaaaaacaaaaattgcaa
gatactagtcttgagaatgaatttgatttagccaatgaaaatgatttgctagaatggagc
agatcggattctcctgtgcgtatgtatctaagagaaatggggcaaattgcacttttaaat
aaagatgaagaaatcgaaatttccaaaaaaattgaacttggtgaagatattatcatagat
gctttttgttccgtgccttatttgattgactttattttagattatcgtgaaccactgatc
aatagagaaagaagagtaaaagaacttttcaaaagctttgatgatgaagaaaaaaatgat
gataagcttgatgaactagaggacgaggatgaagaaaacgatgaagaattagaaaatgaa
gaagaaactcctaaaaaaacaagcaaaaaagaagatgaaagaactttaaaagtcatagaa
aaatttaaagctttagagaaggcaaaaaaagattggctaaaagtttctaaagataaagaa
agtggagatgaaattttagacaaacttggaattgcttttaagaaaaatattctaaaagaa
aagctgatggatctaggtccaacttctaaactcatcagtgaaattgtaaaatcaatggaa
actgccttaaaaagcgatgaagaattcgataaagaattaaaacgcctagaataccgtttg
ccaatgttttctgaagaattaaaaaatcgtcatgctaatatcttaaaagatattacaaaa
ttaagcaaggaagaaattaccgaaagagcgcttgaaacgactatggtaagcacttacatg
gagataaaaaaactttttcaaactaaagaagcgagcgagaaaagctttgacttagaaaaa
gagcgcttgaaagaaattttagagcaaatcaaacgaggtaaaaaaatttctgatgaagct
aaaactagaatggctaaatcaaatttgcgtcttgttgtaagtattgctaagcgttataca
aaccgtggtttaccttttttagatcttatccaagaaggcaatataggtcttatgaaagca
gtggataaatttgagtacaaaagaggatataaattttcaacctatgcaacttggtggata
agacaagctatttcaagagcgatcgcagaccaagctagaactataagaatacctattcat
atgatagaaaccatcaatcaaatcaataaaattatacgcgagcatttgcaaaaagacgga
aaagagcctgatgtaagtgttatagccaaagaagtaggacttagtgtggataaggttaag
caagtgattaaaatcacaaaagagcctatttcacttgaggcgcctattggcagtgaagat
gatggcaaatttggggattttgtagaagatagaaattcactctcgcctatggatcacatt
ttaaaagatgatttaaaagagcaaattgatgaagttcttgatcaactaaacgatagagaa
aaagcagttattcgtatgcgttttggtctaatggacgatgaaagcgatagaactttagaa
gaaataggtaaagaattaaatgttacacgcgaaagagtaagacaaatagaaagctctgca
attaaaaaactcaaacatccaaaagtgggtagaaaactcaaaaactatatcgagggttgg
aagtaa
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