Ruminiclostridium cellulolyticum: Ccel_0452
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Entry
Ccel_0452 CDS
T00835
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
cce
Ruminiclostridium cellulolyticum
Pathway
cce03030
DNA replication
cce03430
Mismatch repair
cce03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ccel_0452
03430 Mismatch repair
Ccel_0452
03440 Homologous recombination
Ccel_0452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cce03032
]
Ccel_0452
03400 DNA repair and recombination proteins [BR:
cce03400
]
Ccel_0452
Enzymes [BR:
cce01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Ccel_0452
DNA replication proteins [BR:
cce03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Ccel_0452
DNA repair and recombination proteins [BR:
cce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Ccel_0452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
HHH_6
DNA_pol3_a_NI
RNase_H_2
tRNA_anti-codon
HHH_3
DEDDh_C
YhfH
Motif
Other DBs
NCBI-ProteinID:
ACL74834
UniProt:
B8I6E2
LinkDB
All DBs
Position
516268..520569
Genome browser
AA seq
1433 aa
AA seq
DB search
MDSTNNINRFLYDLFPDAMDFDGEFSALKQLKVERMSVFIKANRLEIHTISSDIVSIALI
MKAEECLKQKLGAPNLTLKVKCSRSYSVEEYLSIMWSELMQMLTSKVALCRGILHGSKYE
ISGNKIIINLLTSGADILKAQNCHTMLEQHIKGTICQSVKVEFCDMHVDHVIIEEYVAEK
VKNEAKVVSSAITALPENQKQKKYEFKSYGSGDMPSKAVITGKPFTDSIMKISEVTPDSG
KVAVAGEVFRTEYREIRGGKYIYIFDVTDFTSSVTVKMFLEKKDFGNISERITEGVCLRI
RGEAQYDKFSKELAIMAFDIVETEREIRHDDAEEKRVELHLHTQMSSMDGVTAVKDLVKR
AAQWGHKAIAVTDHGIVQAYPDAYAASKKNNIKVIYGLECYLLDDSVPIVYGIKEHSLDD
DFVVFDIETTGLNPQQDRITEIGAVKVRNGQIVDRFSAFVNPGVSIPSFIVKLTGITNDM
VKDAPPIEQVLNEFMEFIQGSVLVAHNANFDVGFIKHNAKIIGEKVKNPYLDTLELCRKM
FPELGRYKLNIVAKHLKIELENHHRAVDDSMATAKIFIHCLNELKEKGCKNIKDIQNAFD
GEVNLKASSYHAIILVKNKVGLKNLYKIVSQSHLKYLYKKPRVPKKLLMEYREGLILGSA
CEAGELYRAILNNKSEDEISKIVRFYDYLEIQPLGNNQFLINNGKVSSQEELKKINKKII
RLGERHRKPVVATCDVHFMDPRDEVFRRILMSGRGFTDADNQAPLYFRTTEEMLEEFSYL
GEEKAREVVIENTNLIADMIESIAPVLEGTFPPKIEGAEQDIENMAMNRAKEIYGEELPE
VVAKRLEKELNSIIKNGFAVMYLIAQKLVSKSLNDGYLVGSRGSVGSSFVANMSGITEVN
SLQPHYVCEKCKYSEFILDGSYDCGFDLPEKDCPNCGNKLKKDGYDIPFETFLGFDGDKE
PDIDLNFSGDYQPVAHKYTEELFGEGYVFRAGTIASVAEKTAYGYVKNYLDERSIVVTNA
EINRLVKGCTGIKRTTGQHPGGIMIVPKDKEIFDFSPIQRPADDIKSEIITTHFDYHFLH
GSILKLDILGHDDPTVIRMLEDLTGVDARTIPIGEKKTMSLFSSTEALGVKPEDIGSETG
TFAVPEFGTKFVRQMLLDTKPQSFSELIRISGLSHGTDVWLNNAQELIRDGITTLSQSIC
CRDDIMIYLMHAGLPPKTAFKIMEDVRKGKGVKEEYEAIMKENNVPDWYIQSCKKIKYMF
PKAHAAAYVMMAFRIAWFKVYYPEAFYATYFTVRADDFDAEMMTYGQDKVRNKIKEFEMK
GNNITTKEKNVLTILEVVNEMYARGINFLPINLYLSEATKFRIEDKSIRPPMNALQGLGG
AAAQNIIEARKNGEFLSIDELRTRAKISKSVIEILERNNVLEGMPESNQLCLF
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggatagtacaaataatataaatagatttttatatgatttattccccgatgcaatggat
tttgacggggaattttctgcattaaagcagctaaaagttgaaagaatgagtgtttttata
aaggcgaacaggcttgaaatacatactataagttctgatatagtaagtattgcacttatc
atgaaagcagaagaatgtctcaagcaaaagcttggggcaccaaatcttactctaaaagtc
aaatgcagcaggagttacagcgttgaggagtacctgagtattatgtggagtgaactaatg
caaatgcttacttcaaaggtggcgttgtgcaggggtattctacatggctccaaatatgag
atttccggcaacaaaataataataaacctgttgacgtcgggagcagacatcctaaaagca
caaaattgccatacaatgttagaacaacatatcaagggaaccatttgccaaagtgtaaag
gttgaattttgtgatatgcatgttgaccatgtcataattgaggagtatgttgcagaaaaa
gtcaagaatgaggcaaaagtagtgagctccgcaataactgctctgccggaaaatcagaaa
cagaaaaagtatgaattcaaatcctacgggtcaggagacatgccctccaaggcagttatt
acaggaaagccttttactgatagtattatgaagatatccgaagtaacacctgattcgggt
aaggttgctgtagctggcgaagttttcagaacagaatacagggaaatcaggggcggcaaa
tacatttacatatttgatgttacagattttaccagttctgttactgtaaaaatgttcttg
gaaaagaaggatttcggaaatatttcagagagaataacagaaggtgtctgcttacgtata
cgtggagaagcccagtatgataaattttcaaaagagcttgccataatggcttttgatatt
gttgaaacagaaagggaaataaggcatgacgatgcagaagaaaaaagagttgaactgcac
ctgcatacacaaatgagttcaatggatggagtaacagcagtaaaggacctggtaaaacgt
gctgcgcagtgggggcacaaggccatagctgttacagaccacggtatagttcaggcatat
cccgatgcatatgctgcatccaagaaaaataatataaaagtaatttatggtcttgagtgc
tatcttctggatgacagtgtacctatagtctatggcattaaagaacattctctggatgac
gattttgtagtatttgacatagaaacaacaggtttaaacccacagcaggacagaattact
gaaattggagcagtcaaggtaagaaacggtcaaattgtggacaggttcagtgcttttgtc
aatccgggggtttcaattccaagcttcatagttaagctgacaggtattactaacgatatg
gttaaggatgcacctcccatagaacaggttttgaatgagtttatggaatttatacaagga
agtgttctcgttgctcacaatgcaaactttgatgtgggctttataaagcataatgcgaaa
ataattggagaaaaagttaaaaacccttatttagataccttggagctttgcaggaaaatg
ttccctgaacttggcaggtacaagctcaatatagttgcaaagcatttaaagattgagtta
gaaaatcatcacagagccgtagatgattcaatggctactgcaaaaatatttatacattgt
ttaaatgaacttaaagaaaaaggctgtaaaaatataaaggatatacagaatgcatttgac
ggagaggttaaccttaaagccagttcttaccatgctattattttagttaagaacaaggtc
ggccttaaaaatctgtataaaatagtatctcaatcccacctgaagtatttatacaaaaag
ccaagagtacctaaaaaacttctaatggaatacagagagggacttattctgggaagtgct
tgtgaagcgggagaactgtacagagcaatacttaacaacaagagtgaggatgagatatca
aaaatagttcgtttttacgattaccttgaaatacagcccttgggaaataaccaatttttg
ataaacaatggaaaggtttcttcccaggaagagttaaaaaaaattaataaaaaaatcatc
agacttggtgaacggcatagaaagcctgtggttgccacatgtgacgtacattttatggat
cccagggatgaggtattcagaagaatattaatgtcaggtcggggatttaccgatgcagat
aatcaagcaccgctttatttcagaactacagaagaaatgcttgaggagttcagctacctt
ggtgaggaaaaggctcgagaggtggtaatagaaaataccaatctcatcgctgatatgatt
gagagcatcgccccggtccttgaagggacgtttccgcctaagatcgagggtgcggaacaa
gatatagagaatatggcaatgaacagagcaaaagagatttatggagaagagctgccagag
gttgtggcaaagagacttgaaaaagaattgaattccattataaaaaatggatttgcggtt
atgtatctcatagcacaaaagctggtttctaagtctctaaacgacgggtatctggttggt
tctagagggtctgtaggttcctcgtttgtagcaaatatgtccgggataaccgaggttaat
tctttgcagcctcactatgtatgtgagaaatgcaagtattccgaatttatacttgatggc
tcctatgactgtggatttgatttgcctgaaaaggactgcccaaattgtgggaataaactt
aaaaaagacggttatgatataccatttgaaacatttcttggttttgacggtgacaaagag
cctgatattgacttgaacttctcgggggattatcagcctgtggcacacaaatatacagag
gagctgtttggagaaggttatgtattcagggcaggtactatagcatctgttgccgaaaaa
accgcatatggctatgtcaagaattatcttgatgaaaggagcatagtggtaacaaacgca
gaaataaacagactggtaaagggatgtacaggcataaagagaactacaggtcagcacccc
ggcggaataatgatagtaccaaaggacaaggagatatttgacttttcgccgatacagaga
cctgcggacgatataaagtcagaaataataaccacacattttgattaccactttttgcat
ggaagtatattaaagcttgatattctggggcatgatgaccctaccgtaatcagaatgctt
gaggatttaacaggagtcgatgcaagaacaatcccaatcggtgagaaaaaaaccatgagc
ttgttcagcagcactgaagcactaggcgtaaagcctgaagatataggaagtgaaacagga
acctttgcagttccggagttcggaacaaagtttgtaagacaaatgctccttgacaccaag
ccacaatccttttctgaattaattagaatatctggtctttctcacggaaccgacgtttgg
cttaataacgcccaggagttaatcagagatgggattactactctttcccagagtatatgc
tgccgtgacgatataatgatttatctgatgcacgcaggacttcccccaaagactgccttc
aaaataatggaggatgtgcgtaagggaaaaggtgtcaaagaagaatatgaagcaataatg
aaagaaaataacgttcctgactggtatattcaatcatgtaaaaaaataaagtatatgttc
ccaaaggcccatgcagcagcatacgttatgatggcattcagaatagcttggttcaaggta
tattatcctgaggccttctacgcaacatactttacagtaagagccgatgattttgatgct
gaaatgatgacttacggtcaggacaaggtaagaaataaaataaaagaatttgaaatgaaa
ggtaataatattactacaaaagagaaaaatgtccttactatacttgaggttgtaaatgaa
atgtatgccagaggaataaatttcctcccaataaatttgtatctttcagaggcaactaaa
ttcagaattgaagataaaagtataaggccgcctatgaatgcacttcaggggctgggagga
gcagcggcacagaacattattgaggcacgcaaaaacggtgaattcctttcaattgatgaa
cttaggaccagagcaaaaataagtaaatcggtaattgaaatactggaaagaaataacgtg
ctggagggaatgccggagagtaaccagctttgtttattttaa
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integrated database retrieval system
