Ruminiclostridium cellulolyticum: Ccel_2488
Help
Entry
Ccel_2488 CDS
T00835
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cce
Ruminiclostridium cellulolyticum
Pathway
cce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ccel_2488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cce03019
]
Ccel_2488
03009 Ribosome biogenesis [BR:
cce03009
]
Ccel_2488
Enzymes [BR:
cce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ccel_2488
Messenger RNA biogenesis [BR:
cce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ccel_2488
Ribosome biogenesis [BR:
cce03009
]
Prokaryotic type
rRNA helicases
Ccel_2488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
FIMAH
DUF6857
Flav_NS3-hel_C
Motif
Other DBs
NCBI-ProteinID:
ACL76816
UniProt:
B8I651
LinkDB
All DBs
Position
3008046..3009743
Genome browser
AA seq
565 aa
AA seq
DB search
MKNLSFKDLTLSDEVQRAIVDMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGI
PAVEKIDPQIDSIQVLVLSPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQIMAL
KKRPQIIIGTPGRVMDHMRRRTIKLESLKMIVLDEADEMLNMGFREDIDTILEKVPEDRQ
TILFSATMPKEILELTKKYQKNPVHIKIAHKELTVPSIEQYYLEVKESAKLEVLSRLIDT
NDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMNLFRKGNFDILIAT
DVAARGIDVDDVEAVFNYDLPNDDEYYVHRIGRTGRAGRTGKAFTFIYGREMYKLRDIQR
YTKSTIIPMKPPSLNEVEEKKMSNILKALKENLKDESVSKFASHIERFIDTINNESEEHD
DNFVSSLDIAGALLKMYGEQSGNLPSVVNEIDNAVEPGSSKDMVRLFINIGSDSKIQPKH
IIESLVASTGLPGKLVGAIDIFDRYSFVEVPKEFAPEVLKSMKNYTIKGKRINIEKSNAR
KKSGRGSSFNRSTPFNRRSPKKSKA
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatttaagttttaaagatttaactctctcggatgaggtacaacgtgcaatcgtg
gatatgggctttgaagaggcaacccctattcagtcccaatcaatcccatatatcctggaa
ggcaacgatttaattggtcaggctcagacaggaacaggaaaaacctgtgcattcggaata
ccagcagtggaaaaaatcgatccacaaattgattctattcaggttttggttctttctcca
actagagagcttgccatacagtcctgcgaagaattgagaaatgttttgaaatataaggac
ggtataagaatattgcctgtatacggcggacagcccattgacagacagattatggctttg
aagaagcgtccacagataatcattggaacccccggtcgtgttatggaccatatgaggcgc
agaactataaagttggaatcacttaaaatgatagtacttgatgaagcagatgaaatgttg
aatatgggtttcagagaagatattgacacaatattggaaaaagttcccgaggacagacaa
accatattgttttctgctacaatgccaaaagagattctcgaactgacaaaaaagtatcaa
aagaacccggttcatataaaaatcgcccacaaggagctcactgtcccgagtatagagcag
tattaccttgaagtaaaggaatctgcaaagctggaagttttgtcaaggttgatagatacc
aacgatattaagctttcccttgttttttgtaatacaaagaaaagagttgacgaactgaca
gccagtctccaatcaagaggtttttcggcggaagctcttcacggtgacatgcgtcaggaa
caccgtgacaaggttatgaatcttttcagaaagggcaattttgatatactcattgcaacc
gatgtcgctgcaaggggtattgacgttgatgacgttgaagcagtatttaattatgacctt
cccaacgacgatgagtattatgtacaccgaattggtcgaacaggaagggcgggaagaaca
ggaaaagcatttacatttatttatggcagggaaatgtacaagctcagggatatacagcga
tataccaaatcgactattattcccatgaagccgcctagtctcaatgaggttgaagaaaag
aagatgtcaaacattttgaaagccttgaaagaaaacctcaaggatgaaagtgtatccaag
tttgccagccatattgaaagatttattgacacaatcaataacgaatcggaagaacatgac
gataattttgtaagctctcttgacattgcaggagcattgctcaaaatgtacggtgaacaa
agcggaaacctgcctagtgttgttaatgaaattgacaatgcagtagaacccggcagtagt
aaggacatggtcagattgttcatcaatataggaagtgatagcaaaatacagcccaaacat
ataattgaaagtcttgtggcatcaacagggcttccgggcaaacttgtcggtgcaatcgac
atttttgacagatattcattcgtagaggtgccaaaggagtttgctcccgaagtgctaaaa
tcaatgaagaactacacaattaagggaaaacgtattaatatagaaaaatccaatgctaga
aagaaaagcggacggggatcgtcattcaaccgctccacaccgtttaacagacgaagtccg
aaaaaatctaaagcataa
DBGET
integrated database retrieval system
