Ruminiclostridium cellulolyticum: Ccel_3376
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Entry
Ccel_3376 CDS
T00835
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cce
Ruminiclostridium cellulolyticum
Pathway
cce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ccel_3376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cce03021
]
Ccel_3376
03019 Messenger RNA biogenesis [BR:
cce03019
]
Ccel_3376
Transcription machinery [BR:
cce03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Ccel_3376
Messenger RNA biogenesis [BR:
cce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Ccel_3376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA
S1CSD-TOTE-2
Mor
Trans_reg_C
AAA_22
LAGLIDADG_1
DUF3086
Motif
Other DBs
NCBI-ProteinID:
ACL77665
UniProt:
B8I1N0
LinkDB
All DBs
Position
complement(3913774..3915846)
Genome browser
AA seq
690 aa
AA seq
DB search
MDQINLQSKTLEDLRYIAKMLGIKSISKYKKSELVKLLSENAEKIKADNIVETVVSEEPK
KAEPAANTIDTHVSEERSKEASEEIPVLRKSRRGRPSKASKLMDKPENNGVADPITSVPV
QETVIPGNNLNIVPEQNGKPDRLSDTLRHLETKNIEKKAHGRGRKKDVQPSIESPNTENK
AETNTSAVSAGATVNDSIVNLPQRKNGRAKPEQTVEQPKNVPDEKIPVKVEKDSKPKIYK
KEEQPTARQDTRQLHRQVKQHTNTNNKSDNAPEPQRIPLNQQPQQVQPQQVVPPQSQVIS
PQIQQPQGSEKIESDDPVEGVLEVLPDGYGFLRSENYLSGPKDVYVSPSQIRRFGLKTGD
KLRGKGRIPKEGEKFQALLYVQSINGDTPDVASKRVAFEYLTPIYPDNRITLETSPREFS
TRLIDLIAPIGKGQRGMIVSPPKAGKTILLKKIANAITINYPEAELIVLLIDERPEEVTD
MQRSIKGEVIYSTFDEVPEHHIKVAEMVLERAQRLVEQKKDVVILLDSITRLARAYNLTI
PPTGRTLSGGLDPGALHKPKRFFGAARNIEYGGSLTIMATALIETGSRMDDVIFEEFKGT
GNMELHLDRKLSEKRIFPAIDINKSGTRREELLLSQKELESVWAIRKAMSNMGTAEVTEI
LINKLMQTRTNEDFVNSIKISFLDKNSQDR
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggaccaaattaatttacaatcaaaaacgttagaagatttgagatatattgcaaagatg
cttgggattaaaagtatatccaaatataagaagagtgagttggtaaaattgcttagcgaa
aacgctgaaaaaattaaagccgacaatattgtggaaacggttgtttctgaagaacctaaa
aaggctgaaccagctgctaatacaatagatactcacgtaagcgaagaaaggtccaaagaa
gcatcggaggagattcctgttttaagaaaatcccgaagaggaaggccgagcaaggcatcc
aaattaatggacaagccggaaaataatggtgtagcagatccaatcactagtgttccagtt
caggaaacagtcattccaggaaataatctaaatatcgtacctgagcaaaatggcaaaccc
gatagattgtctgacacattaaggcatctggaaacaaagaatattgagaagaaggcccat
ggcagaggtcgcaaaaaggatgttcaaccttctattgaatccccaaatactgaaaataag
gcagaaaccaatacatcagcagtttcagcaggggctacagtgaatgattctatcgttaac
ctgcctcaaaggaaaaatggcagggcaaagccggagcaaacggtagaacagccaaaaaac
gttcctgatgagaagatacccgttaaagttgaaaaggattctaaacctaaaatatacaag
aaggaagaacaaccaacagcaaggcaagatactaggcaattgcataggcaagttaaacag
catacaaatacaaacaacaagtctgacaatgcacccgaacctcagcgtataccgctaaat
cagcagccacagcaggttcagcctcaacaagtggtgccgccccagtctcaggttatttca
cctcaaattcagcagccgcaaggtagtgaaaaaattgaaagtgatgaccctgtagaagga
gttcttgaagtgttaccagacggatatggttttttaagaagtgagaattatctgtccggc
cccaaagatgtttatgtttcaccttcacaaataagacgttttggacttaaaacaggggat
aagctcagaggtaaaggcagaattccgaaagaaggcgaaaaatttcaggcattattatat
gtacagtccataaacggggacactcctgatgttgcatcaaagagagtagcgtttgagtac
ttaacgcctatatatcctgataacagaattacgctcgaaacttcaccaagggaattttca
accagacttatagatctcatagctccaatcggaaaaggccagagaggaatgatagtatct
ccccctaaagccggtaaaacaatacttttaaagaaaattgcaaacgcaattacaatcaat
taccccgaagcagagttaatagtacttcttatcgatgaaagacctgaagaagtaaccgat
atgcagcgttctataaagggagaggttatatattctacatttgacgaggttcccgaacac
catataaaggttgccgagatggttctggagagagcacagcgtcttgttgagcaaaagaag
gatgttgttattcttctggatagtataacaaggctggcaagggcttataaccttactatt
cctccgacaggaagaactttatccggcggtttggatccgggtgcgcttcataaaccgaaa
agattttttggagcagcaaggaatattgaatacggaggcagtttgacaattatggccacc
gctctcatagaaacaggaagcagaatggatgatgtaatctttgaggaattcaagggaacc
ggtaacatggaacttcatctggatagaaagctttctgaaaagagaatattccctgcaatc
gatattaataagtcgggaaccagacgtgaggagcttcttcttagccaaaaagagcttgag
agcgtatgggctataagaaaagcaatgagtaatatgggaacagcagaggttacagagatt
ttaattaacaagctaatgcaaactagaacaaacgaagactttgtaaatagtataaaaata
tcgtttttagataaaaattctcaggatagataa
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