Clostridium cellulosi: CCDG5_0220
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Entry
CCDG5_0220 CDS
T03806
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ccel
Clostridium cellulosi
Pathway
ccel03410
Base excision repair
ccel03430
Mismatch repair
ccel03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CCDG5_0220
03430 Mismatch repair
CCDG5_0220
03440 Homologous recombination
CCDG5_0220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccel03400
]
CCDG5_0220
DNA repair and recombination proteins [BR:
ccel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CCDG5_0220
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CCDG5_0220
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CCDG5_0220
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PhoU
Motif
Other DBs
NCBI-ProteinID:
CDZ23363
UniProt:
A0A078KLS1
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All DBs
Position
I:231580..233616
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AA seq
678 aa
AA seq
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MVRREWRVLQPDKEAIANLRKAGYPRVTATLLALRGLKDPEEAKSFLSGDGKFHDPMLLA
DVEKAAARILKAIEGHEKITVYGDYDADGVTSAALLYSYLKENGADVDYYIPDRESEGYG
LNSAACKRIADSGTTLIITVDTGISAFDEAKLLNELGVCLIITDHHNPYDTLPEAYAIVN
PKRQDCKYPFKELAGVGTAFKLVCAIEKSKPEGLSEDALFKKYGELVCVGTVADVVPLLG
ENRLIVCRGLKLISEGKNIGISALLEAAGVRRRLTSTLLGFTVAPRINACGRIATAGDAF
ELLTTRDTDKAKQLAQKLNDNNSERRRIEAEILKETVKNIDENESLRLSPLLIVSGEKWH
NGVIGIVASRLVELYGKPAIVVSFDGDIGRASCRSVPGFNIHAALKSCSQYLERFGGHEL
AAGFTVKRENYDALYAALNHLASIQPELPTLRVCMDMKLHGYEISLSTAREVRRLEPFGS
GNPAPLFYVPAAQITALSPVGDGHTRISFNCDGFEFTAVMFNTARRGFDFEVWDIVDLAV
SLEVNLYKNTESLGVIVRDIRKSACFEYYTELYKSFLSGTPIASDALRARLKPDREEFAA
VFRLLTRHEGKISLEKACKDICRVKPRFNYFKLLLIKDIFTETGLIVSDGQDDGENITYR
LRSGVKIDLAASALLKRL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
ttggttcgcagggagtggcgcgttttgcagcctgacaaggaggctatagcaaatttgcgc
aaagcgggatacccgcgggttaccgctacacttttggcgctgcgcggattgaaagacccg
gaagaagccaaaagttttctctccggagatggaaaattccatgacccaatgcttttagcg
gatgttgaaaaggcagcggctcgaatcttaaaagcaatagagggccatgagaaaataacg
gtttatggtgattatgacgctgacggtgtaacctccgccgcgcttttatattcttatctt
aaagaaaacggcgcagacgtggattattatataccggacagggaaagcgagggctatggg
ctaaacagcgctgcctgcaaaagaattgcagacagcggcacgacgcttatcattacggtt
gacaccggcatatccgccttcgacgaggcaaaactgctcaacgagctcggcgtctgtctg
ataatcaccgaccaccacaacccgtatgataccctgcccgaggcatatgccatagtaaac
ccgaagcggcaggactgcaaatatccgttcaaagagcttgccggcgtcggcacagccttc
aagcttgtctgcgcaattgaaaagagcaaacctgaaggactttcagaagacgctttgttt
aagaaatacggggagcttgtctgtgtcggcacagtggcggatgtggtgccccttctcggc
gaaaacaggcttatagtatgccgcggcctcaagctcatttcagagggcaaaaatatcggc
atatcagccttgctcgaagcggcaggagtgcgccgcagattaacgtccacacttttgggt
tttaccgttgcaccgcgcataaatgcctgcgggcgtatagcgacagccggcgacgccttt
gagcttttgacaacgagagataccgataaggcaaaacagcttgcacaaaagcttaatgat
aataacagcgagcgccgccgcatagaagcggagatattgaaggagaccgtaaagaatatc
gacgagaatgaatcgctgcgcctgagcccattattaattgtttcaggagaaaagtggcac
aacggtgtaattgggattgtagcatcgaggctggttgagctttatggaaagccggccata
gtcgtatcgtttgacggcgatatcgggcgcgcctcttgccgcagcgtaccgggattcaat
atccatgccgcgctgaagtcatgttcacaataccttgagcgtttcggcggccacgaactg
gcggcagggtttactgtaaaacgggaaaattatgacgctctttacgccgctttaaaccat
ctggcgagtattcaaccggagctgcccaccctgcgcgtctgcatggatatgaaactgcac
ggctatgaaatatccctgtcgacggcgcgtgaagtcagacgcctcgaaccttttggcagc
ggaaaccctgcaccgcttttctatgtgcccgctgctcagattacagctctttccccggtt
ggcgatggccatacccgtatttcgtttaactgcgacggctttgaatttacggctgtcatg
ttcaatacggcaaggcgaggttttgattttgaggtttgggatatagtagaccttgccgta
tcgcttgaggtaaatctttataaaaacaccgagtcactcggcgtgattgtaagagatata
agaaaatcagcgtgtttcgaatattatactgaactttataaatcctttttgtcaggtacc
cccattgcttctgacgcattaagggccaggctgaaacccgaccgcgaagaattcgccgcc
gttttccggctgttgacccggcatgaaggcaagatttcgcttgaaaaggcatgcaaggat
atttgccgcgttaaaccgcgttttaattattttaagctgctcctgataaaggatattttc
actgaaacaggccttatcgtcagcgatggtcaggatgatggcgagaatattacataccgc
ctgcgcagcggagtcaaaatcgaccttgcggcatctgcacttttgaaaaggttgtag
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