Clostridium cellulosi: CCDG5_0702
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Entry
CCDG5_0702 CDS
T03806
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ccel
Clostridium cellulosi
Pathway
ccel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCDG5_0702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccel03019
]
CCDG5_0702
03016 Transfer RNA biogenesis [BR:
ccel03016
]
CCDG5_0702
Enzymes [BR:
ccel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CCDG5_0702
Messenger RNA biogenesis [BR:
ccel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CCDG5_0702
Transfer RNA biogenesis [BR:
ccel03016
]
Prokaryotic type
tRNA degradation factors
CCDG5_0702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
MC7
Ino80_Iec3
Sigma70_r3
Motif
Other DBs
NCBI-ProteinID:
CDZ23831
UniProt:
A0A078KJM0
LinkDB
All DBs
Position
I:754935..757037
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AA seq
700 aa
AA seq
DB search
MSTKNLASKVNKILKAKGYRPATVHEIAVKLNIPVKSRAQFFKVLNKMWVDGQIEFTPNG
KIISNEKGQNELATILSVGKNGAYARLSEDNTDVFIFPEDLNGAMPSDTVKVKIIKRKGA
RRQAVVMTIVERGFCEFTGIFHRIGKHAYVVPDAKYKGKIKVNPKETRFINDGEMVFAKM
RNYEKRGCEAKATIIKSYGPPDSASACCQSILDRYHARTVFPNEVLDEAKTVSSKFEIDG
DRVDLRHLPIFTIDGATAKDLDDAVSVEETENGYRLGVHIADVSHYVKPNSPLDEEAYLR
GTSIYFGNSVIPMLPKELSNGICSLNPGEDRLTFSAFMDIDKNGSLVSYKLAKSVIRSRV
KGVYSEVNKIFNGEADDELLQKYSEVLPSLKIMRKLAALLRKVRSNRGAFDFETDESEII
IGEDGKAIDIKRRERGEAERLIEEFMLCANEAVATFAFSRKLPFVYRIHEAPEEGKLMEL
AAALNAAGIDTRAIHPGLKPADIKNVLEKIKGSPKEKALNNVILRSMSKARYSPDCIGHF
GLSLKYYCHFTSPIRRYPDLAIHRILSDLLLNKTPEELTKRYNTFVTHASENSSAREIAA
MQIEWSCEDAYKAEYMSSHIGEKFTGHVSSVKSFGMYVMLENTVEGLVRIENMPGWYDFD
EQNMTLKSRATGKTYTVGDEVNVILAGTDIPSGRIDFTLI
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaaaaaatttggcttctaaggtaaataaaattctaaaagcaaaaggttacaga
cccgcaacagtgcatgaaatagcagtaaaattaaatattccggtaaaatcgcgggctcaa
tttttcaaagttctgaataagatgtgggtagacggtcaaatagaattcacgccgaacgga
aaaatcatcagcaatgaaaaagggcaaaatgaactggcgacgattctttctgttggcaaa
aacggggcatacgcaagactttccgaagataatactgacgtttttatctttcctgaagat
ttaaacggcgcaatgccttcagacactgtaaaagtgaagattataaagcggaaaggcgcc
cgccgtcaggcagttgttatgactattgtagaacgcggattttgtgaattcacaggaata
tttcacaggataggcaagcatgcgtatgtggtaccggacgcgaaatataaaggaaaaatc
aaggttaatcccaaagaaacgcgtttcatcaatgacggagaaatggtattcgcaaaaatg
cgaaactatgagaaacgcggatgtgaggcaaaagctacaatcatcaaatcctatgggccg
ccagacagtgccagtgcttgctgccagtctattcttgacagataccacgcaaggacagtt
ttcccgaacgaagttttagacgaggctaaaacggtttcgagcaaatttgaaattgatggt
gacagagtcgatttacggcatcttccgattttcacaattgacggggcaacggcaaaggac
cttgacgacgccgtctcggtggaggagactgaaaacggttacaggctcggcgtccatatc
gcggacgtgtcacactatgtaaagcccaattcaccacttgatgaggaggcatatctgagg
ggaacgtccatctattttggcaactcagtaatccccatgcttccaaaagagctttcaaac
ggcatatgctcccttaacccgggagaagacaggctgactttctcggctttcatggatatt
gacaaaaacggttcgctggtatcgtataaactggcaaagtccgttatcaggtcaagggtc
aagggcgtttacagcgaggtcaacaagatttttaacggtgaagccgatgacgaactgctg
caaaaatacagtgaagttttgccgtcacttaaaataatgcggaagttagccgctttgctg
cgtaaggtgcgctcaaacaggggagctttcgattttgagaccgatgaatcggaaataata
ataggtgaggacggcaaagcgatagacatcaaaaggcgtgaacgcggtgaagccgaacgc
ctgatagaagaattcatgctgtgtgcgaatgaggctgtcgcgacatttgccttttcccgg
aagctgccttttgtttatcgtatccatgaggcacctgaagagggaaaactaatggaactt
gcggcggcgttaaatgccgcgggcatagacacaagggcaatacacccgggccttaaaccc
gccgatattaaaaatgtacttgaaaagataaaaggttctcccaaagagaaagcgctgaac
aatgtcattctgcgctcaatgtcaaaagcgcgttatagccctgattgtatcggccacttc
gggttgtcgctcaagtattactgccattttacctcgccgataaggcgttatcccgacctt
gcaattcaccgtattctcagcgacctgctgctcaataaaacccctgaagagcttactaaa
cgctacaacacctttgtgacgcatgcgtccgaaaactcatctgcacgcgagattgccgca
atgcagatagagtggagctgcgaggacgcgtacaaagccgagtatatgtcgtcacatatc
ggcgaaaagtttacagggcatgtttcatcggtcaagagctttgggatgtatgtaatgctg
gagaatacagtggaaggcttagtcagaatagaaaatatgccgggctggtatgactttgat
gaacagaatatgacgctaaaaagcagggctacaggaaagacgtataccgtcggcgacgag
gtaaatgtcatactggctggcactgacatcccgtcaggacgtattgatttcacattaatt
tga
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