Clostridium cellulosi: CCDG5_1453
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Entry
CCDG5_1453 CDS
T03806
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccel
Clostridium cellulosi
Pathway
ccel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCDG5_1453 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccel03400
]
CCDG5_1453 (mfd)
Enzymes [BR:
ccel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCDG5_1453 (mfd)
DNA repair and recombination proteins [BR:
ccel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CCDG5_1453 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
CDZ24563
UniProt:
A0A078KQ61
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All DBs
Position
I:complement(1549397..1552888)
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AA seq
1163 aa
AA seq
DB search
MKFLAEILNKLPEFRALSSAVDLSRHVSATGLSGVNKAHAVYALAEQKNKKVFVIAPDEQ
EAVKMVSDLTTFFGGGVYFFPSRDFTLRQVEGVSHEYEHERLRVLGRMAQGDFKAVVACA
DAVMQLTIPLEEYKKRTIELKRGVEISLNDVVQALIGAGYVRSDEVSGMGQYALRGGIID
VFPPHTERPVRIEFWGDEPDTISYFDTESQRRLESVDSILITPAVEVVFDSMEDLASKIE
SLKNGLKTKSAEKAIQSLSKDIERLRGGSMLPSNDRYLPLCYGGKPATIFEYAPDAILFV
SEPSRTYERAKNTLWQHGEDVKVLLEDGVLCKGLDRYYISMAELESLFEKRGAVYLDTFV
RASYETNVRDVIHFTAKQLSVWGGNLSLLTEDLKTIMDKGGSAVVFGGTPRSCEALVHDL
IDEGITVYGGSKISADNIKAPPPRTVLVLPGTLSAGMEYPSISFSVITHGHINAERHTVR
RFKKGKQIRNLSELVPGDYVVHSTHGIGIYEGIHKLEVQGVVKDYIKIRYAGTDTLYVPV
TQLDLVSKYIGAREDSTVRLSKMGGAEWQKVKSRTRAAVKDMAKELIKLYAERQKIKGIA
FEPDNEWQREFEERFEYEETDDQLRCAAEIKNDMEKPVPMERLLCGDVGFGKTEVALRAA
FKCVMSGKQCAMLVPTTILAWQHYQTVTRRVEGFPVRVELLSRFRTPKEQADIIKRLARG
EIDIVVGTHRLVQKDVKFRDLGLLIIDEEQRFGVAHKEKLKEKFKNVDVLTLSATPIPRT
LNMALSGIRDMSIIEEAPQDRHPVQTYVLEHDWGVIADAIRKELRRGGQVYYLHNHVESI
ENTAAKIQSLIPDARIGIGHGKMNEEELSRVWERLLNHDIDILVCTTIIETGVDVPNCNT
LIIEDADRMGLSQLHQLRGRVGRSSRRAFAYFTFRRGKVLADVATKRLAAIREFAEFGSG
FQIAMRDLEIRGAGNILGSQQHGHMEAVGYDMYLKLLNEAVLEEKGEKPPVDNECMVDIQ
VSAHIPETYIESANQRLEIYRRIADIRNEEDMSDVLDELIDRFGDPPQAVKSLVDVALVR
NTAAALGIHEISQRGDMIMLFTGKIDFKAVSVLVSKLRGRVMVSAGQKPYISVKLKPDQS
PVDAIHEVLNILSRSKETQDSKQ
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttttagcagaaatcctaaacaaattaccagaattccgcgctctttcaagtgcg
gtcgatttgtcacgccatgtttcggcaactggtctttccggagtcaataaagcccatgct
gtttacgcgcttgcggaacagaagaacaagaaagtttttgtcatagctccggacgaacag
gaagccgtaaagatggtgtcggaccttactaccttttttggcggcggtgtgtatttcttc
ccctcgcgtgacttcacgctcaggcaagttgagggcgtatcccatgaatatgagcacgag
cgcctccgcgttctggggcgcatggcacagggcgattttaaagctgtcgttgcctgcgca
gacgccgtcatgcaacttaccatccccttagaggaatataaaaagcgtacaattgagtta
aaaagaggcgttgagatttcgctgaacgatgtcgtacaagcgcttataggtgctggttat
gtccgttcagatgaagtcagcggtatggggcagtatgcgcttcgcggaggaataattgac
gtattcccgccgcatactgaaaggcctgtccgcattgagttctggggcgatgagccagac
acgataagctatttcgacaccgaatcgcaaaggcggctcgagagcgttgactcaatcctt
atcacgccggccgttgaagtggtttttgattcaatggaagacctggcttctaaaatcgag
tcgctcaaaaatggccttaagacaaaatccgcggaaaaggccatacagtcactttccaag
gatatagagaggctgcgcggaggctcaatgctcccgtcaaacgacagataccttccgctt
tgttacggcggaaagccggcgaccatatttgaatacgcgccggacgccatcctttttgtc
agcgagccgtcgcggacttatgagcgtgcgaagaatacgctgtggcagcatggggaagat
gtgaaagtgctgcttgaggacggcgtactgtgcaaagggcttgacaggtattacatcagt
atggccgaactcgaatctttgtttgaaaagcgcggcgctgtttaccttgacacctttgtt
cgggcgtcatatgaaaccaatgtccgagacgtgatacattttacggcaaagcagctttct
gtttggggcgggaatctgtcgctgctgacggaagatttgaaaacgataatggacaagggc
ggctccgcagtagttttcggcggaactccccgttcctgtgaagcgttggtgcatgattta
atcgacgaaggcataaccgtctacggcggcagcaaaatttctgcggacaatataaaagcg
cctccgccgaggacagttcttgtcctgcccggaacgctttccgccggaatggagtacccg
tctatatccttttccgtaataacccacgggcatataaacgcggaaaggcacacagtaagg
cggtttaaaaaaggcaaacagataaggaatctgtccgagctggttccgggcgattatgtc
gtccactccacccacggtatcggcatttatgaaggtattcacaagctcgaagtacaaggc
gttgtgaaggattatataaagatcaggtatgccggaacagatacgctctatgtcccggta
actcagcttgaccttgtttcaaaatatatcggggcgagagaagacagcaccgtccggctg
agcaaaatgggcggagcggaatggcagaaagtaaagtcccgcacccgcgccgccgtcaag
gatatggcgaaagagctcatcaaactctatgccgagcggcagaagataaagggcattgct
tttgaaccggacaatgaatggcagcgggagtttgaggagcgctttgaatatgaagaaacg
gatgaccagctccgctgcgccgccgaaatcaaaaacgatatggaaaaaccggtgccgatg
gaacggttgctttgcggcgacgtcggatttggcaagacagaggtagcgctccgcgccgcc
tttaaatgcgtgatgagcggaaaacagtgcgcaatgcttgtgccgaccacaatccttgcg
tggcagcattaccaaaccgtaacccgccgtgtcgagggtttcccggtccgcgtcgaactt
ctgtcccgattccggactccaaaggagcaggccgatatcatcaagcggctggcgcgagga
gagattgacattgttgttggtacccacaggcttgtccaaaaggacgtaaaattccgcgac
ctcgggctgcttattatagacgaggaacagcgttttggcgttgcgcataaggaaaaactc
aaggaaaagtttaaaaacgttgacgtgctgaccctttcggcaacgccgataccgaggacg
ctcaacatggccctttccggtatccgcgacatgtcgataatcgaggaagcgccgcaggac
aggcaccctgttcagacttatgtccttgagcacgactggggcgttatcgccgacgctatc
cgcaaggaattaaggcgcggcggtcaggtatattacctccataaccacgtcgagtcaata
gaaaacacagcggcaaagatacagtcgcttattcccgacgcgcgcattggcataggccac
ggcaagatgaacgaagaagagctttcccgcgtttgggagcggcttttgaatcacgatata
gacatacttgtctgcacgacgattattgaaactggtgtagacgtcccgaactgcaacacg
cttataattgaggacgccgaccgcatggggctgtcacagcttcatcagttacgcgggcgc
gtcggccgctcttcacggcgtgcgtttgcttattttacattcagacgcggcaaggtattg
gccgatgtcgctacaaagaggcttgcggcaatccgcgaatttgccgaatttggctctggc
ttccagattgccatgcgcgaccttgaaatccgcggtgcaggcaatatcctcggctcacag
cagcacgggcatatggaagccgtcggctacgatatgtatctaaagctgctcaatgaggcg
gtgctggaggaaaagggcgagaaaccgccggtcgacaacgaatgtatggtggatattcag
gtgtccgcccacattcctgaaacatacatcgaaagtgcgaaccagaggcttgaaatttat
cgccgcatagctgatatccgaaacgaggaggatatgtccgacgttctcgacgaactgatt
gaccgtttcggcgacccgccgcaggcggtaaaatcccttgtcgacgtagcgcttgtccgc
aacacagcggctgcactcggtatccatgagatttctcagcgcggcgacatgataatgctg
tttacgggaaagatagatttcaaggccgtttctgtgcttgtgtccaagctccgaggaagg
gtaatggtgagcgccggccaaaagccttatatctcggtcaagcttaaaccggatcagtcg
ccagtcgacgcaatccacgaagtgttaaatatactttcacgctcaaaggaaacacaagac
agcaaacaataa
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