Clostridium cellulosi: CCDG5_1668
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Entry
CCDG5_1668 CDS
T03806
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccel
Clostridium cellulosi
Pathway
ccel03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCDG5_1668 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccel03021
]
CCDG5_1668 (rpoC)
03400 DNA repair and recombination proteins [BR:
ccel03400
]
CCDG5_1668 (rpoC)
Enzymes [BR:
ccel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCDG5_1668 (rpoC)
Transcription machinery [BR:
ccel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCDG5_1668 (rpoC)
DNA repair and recombination proteins [BR:
ccel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCDG5_1668 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Pkinase_fungal
LPD26
Motif
Other DBs
NCBI-ProteinID:
CDZ24776
UniProt:
A0A078KM27
LinkDB
All DBs
Position
I:complement(1780677..1784198)
Genome browser
AA seq
1173 aa
AA seq
DB search
MEFSVFDKIKIGLASPEKIYEWSYGEVKKPETINYRTLKPERDGLFCERIFGPQKDWECH
CGKYKRIRFKGKICERCGVEVTRSKVRRERMGHIALAAPVSHIWYFKGIPSRMGLILDLS
PRLLEKVLYFASYIVIDPGNTPLEKKQLLTEKEYRDMREKYEDDFKAGMGAEAIKELLAE
IDLEKLSAELKEELKNSTGQKRVRILKRLEVVEAFRLSGNRPEWMILEAVPVIPPDLRPM
VQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIIRNEKRMLQEAVDALIDNGRR
GRPVTGPNNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKEM
ALELFKPFVMKRLVETGAANNIKSARKMVERAKTEVWDALEDVIKGHPVLLNRAPTLHRL
GIQAFEPVLVEGRALKLHPLTCTAYNADFDGDQMAVHVPLSAEAQAEARFLMLAANNLLK
PSDGRPVTVPTQDMVLGSYYLTIIMPNEPGEGKVFRSFEEALLAYHSGVVGLHAPIKVRV
EKEIDGKKISRIIDCTIGRIIFNEPIPQDLGYVDRTDEEHMLDLEIAFLVGKKELGKIIE
KCIAVHGTSVTAEVLDKIKAQGYKYSTKGAITVSVSDAVIPPQKKELIAEAERKIEDISK
KFRRGLLSEEERFDHVIKVWDETTKKVTNALTDNLDRFNPIFMMANSGARGSINQIRQLA
GMRGLIANTSGRTIEVPIRANYREGLNVLEYFVSSRGARKGLADTALRTADSGYLTRRLV
DVSQEVIIREEDCGTSKGITVHSIKDGNEMIEPLTDRLIGRYPAEDVIDPDSGEVIAKRN
VMITEKTANRIVKAGIEAVKIRSVLTCESKNGICAKCYGANLANGEPVNVGEAVGIIAAQ
SIGEPGTQLTMRTFHTGGIASAEDITQGLPRVEELFESRKPKHLAIISEIDGVVSMFEDK
KGRQVIVTNPETGDSRTYSIPYGSRIKVSEGERISAGDLLTEGSVNPHDILAVNGPEAVQ
DYLIQEVQRVYRMQGVDINDKHIEVIVRQMMRKFKIDDPGDTNLLPGELLELPQIEEENR
RIRERIRNGEEGLREATYVPTLLGITKASLATESFLSAASFQETTRVLTEAAIKGKVDPL
LGLKENVIIGKLVPAGTGMECYRDVDIEVEEQA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
gtggaatttagtgtatttgataagattaagatagggcttgcctctcccgaaaaaatttat
gaatggtcctatggtgaggttaaaaaaccagagacaataaattacagaaccttaaagcct
gagcgtgacggccttttctgcgaacgcatattcgggccgcagaaggactgggagtgccat
tgcggaaaatataagcgtatccgtttcaagggcaaaatttgcgaacgctgcggtgttgaa
gtaacccgctcaaaggttcgccgcgagcgcatgggccatatcgcgctcgcagccccagtt
tcacatatctggtactttaagggcattccgtcaagaatgggacttattcttgacctatcc
ccgcgccttttggaaaaggtgctgtactttgcttcttatatcgtaatcgacccgggcaat
acaccgctcgagaaaaagcagcttcttaccgaaaaagaataccgcgacatgcgtgaaaaa
tatgaggacgatttcaaggccggcatgggtgccgaggccattaaagagctgcttgctgaa
atcgacctcgaaaagctctctgcagagcttaaagaagagctgaagaattcaaccggtcaa
aagagggtaaggattcttaagcgtctggaagttgtcgaagcattccgtctttctggcaac
aggccggagtggatgattctggaagcagttcctgtcattccgccggacctgcgcccgatg
gtccagttggacggcggacgtttcgcaacatcggatttaaacgacctttaccgcagggtt
atcaaccgtaataacagactcaagaggctccttgagcttggagctccggatattatcatc
cgcaacgaaaagagaatgcttcaggaagctgtcgacgcccttatcgacaacggacgccgc
ggacgccctgttacaggcccgaacaacagaccgttgaaatcgctttcagatatgctgaaa
ggtaaacagggacgtttccgccagaacctgctcggtaaacgtgttgactactccggacgt
tcggttatcgtcgtcggccctgaactgaagatgtatcagtgcggcctgccgaaagagatg
gctctggagctgttcaaaccgtttgttatgaagcgccttgttgaaacaggtgctgccaat
aatataaagagcgcaagaaagatggtagaacgcgcaaagaccgaggtttgggacgcgctg
gaagacgtaatcaaagggcatccggttcttctaaaccgtgctcctactctgcacagactc
ggtatacaggcattcgaacctgttctcgttgagggccgtgcacttaagcttcatccgctt
acctgtactgcttacaatgcggacttcgacggtgaccagatggctgttcacgttcccctt
tcggcagaagcgcaggctgaggcacgtttcctgatgcttgctgctaacaacctgttgaag
ccttctgacggccgccctgttactgttcctactcaggacatggtcctcggttcctactat
ctgactatcataatgccgaacgagccgggcgaaggcaaggtattccgcagctttgaagaa
gccctccttgcttatcattcaggcgtcgtcggtctccacgctcctattaaggtaagggta
gaaaaagagatagacggcaagaagatatcacgtattatcgactgcacaatcggtcgtatc
atatttaatgaaccgattcctcaggatctcggttatgttgacagaaccgacgaagagcat
atgcttgatctggaaatcgcattcctcgtcggcaagaaagaactcggaaaaattattgag
aagtgcatagcagttcacggaacatccgttactgcggaagtgcttgataagattaaggca
cagggttataagtattcaaccaagggcgccattacagtttctgtttccgacgccgtaatt
cctccgcagaagaaggaactcattgccgaagcagaacggaagattgaggatataagcaaa
aagttccgccgcggcctgctctccgaggaagagcgtttcgaccatgtcattaaagtctgg
gatgaaacgacaaagaaggtcacaaacgcattgaccgacaacctcgacaggttcaacccg
atattcatgatggcgaactccggtgctcgtggttccatcaaccagataagacagttggcc
ggtatgcgcggacttatcgctaacacgtccggacgcaccattgaggttccgattcgtgct
aactaccgtgaaggccttaacgtattggaatacttcgtttcatcccgtggtgccagaaag
ggtcttgctgatacggctcttcgtactgcggactccggttacctgacccgccgccttgtc
gatgtttcgcaggaagttattatccgcgaagaggactgcggaacaagcaaaggcataacc
gtccactcgatcaaagacggcaatgagatgatcgagccgctgactgacagacttatagga
cgttatccggctgaagatgtcattgatccggattcgggtgaagtgatagccaagcgcaac
gtcatgattaccgaaaagacggcgaacagaattgtaaaggccggcatagaagcggtcaag
attcgttcagtgctcacctgtgagtccaagaacggtatctgcgctaaatgctacggtgcg
aaccttgccaatggcgagccggtcaacgtaggtgaagccgtcggtatcattgcagcacaa
tccatcggtgaacccggtacacagcttacaatgcgtactttccacaccggcggtatcgcg
agtgccgaggatattacacaaggtttgccgcgtgttgaagaactcttcgagtctcgtaaa
ccaaagcaccttgctattatctctgagattgatggcgtcgtcagcatgtttgaggataag
aaaggacgtcaggttatcgtcacaaatcctgaaacaggagactcccgcacttactctatt
ccttacggctccagaattaaggtttcagaaggcgagaggatttccgcaggtgacctcctg
acagaaggctccgtcaatccgcacgacattttggcagtaaacggtccagaggcggttcag
gattacctcattcaggaagttcagagagtttaccgtatgcagggtgttgatatcaacgat
aaacacatcgaggttatcgttcgtcaaatgatgcgcaagtttaagatcgatgatccggga
gatactaacctgctgccgggcgaactgcttgaactgccgcaaattgaggaagaaaacaga
aggatccgcgagcgtatccgtaatggtgaagaaggtctccgcgaagccacctatgtaccg
acgctcctcggtattacaaaagcctctcttgctacagaatcgttcctgtcggctgcttcc
ttccaggaaacaacaagggttctcaccgaagccgccatcaagggcaaggttgacccgctg
ctgggacttaaagaaaacgttatcatcggaaagcttgttcctgcaggaaccggtatggaa
tgctaccgcgatgttgatattgaagtagaagaacaggcttga
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