Cellulosimicrobium cellulans: CBR64_16590
Help
Entry
CBR64_16590 CDS
T04858
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cceu
Cellulosimicrobium cellulans
Pathway
cceu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cceu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBR64_16590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cceu03019
]
CBR64_16590
Messenger RNA biogenesis [BR:
cceu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CBR64_16590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ARU52821
UniProt:
A0A1Y0HXF4
LinkDB
All DBs
Position
3854312..3855997
Genome browser
AA seq
561 aa
AA seq
DB search
MSHPHPELSLPPELPTGGLRIVALGGLGEVGRNMAVLEYDGRLLVIDCGVLFPEDNQPGV
DLILPDFDYIADRLDDIEAIVLTHGHEDHIGAVPYLLRLRRDIPLVGSQLTLAFVEAKLK
EHRISPVTLAVKEGQVEQLGVFRCEFVAVNHSIPDALAVAVTTGAGTVLHTGDFKMDQLP
LDGRITDLRAFARLGEQGVDLFMVDSTNAEVPGFVTPEVEIGPVLDNVFAASEKRIIVAS
FSSHVHRVQQVLNAAHHHGRRVALVGRSMVRNMTIAAELGYLHVPEGVLIDLKKVDSLRD
DEIVLMCTGSQGEPMAALSRMANGDHKVQVGHGDTVILASSLIPGNENAVFRIINGLTRL
GARVVHGGNAKVHVSGHASAGELLYCYNVLKPKNVMPVHGEVRHLVANGALAVRTGVPAD
RVVLAEDGVVVDLVDGKASVVGAVPCGYVYVDGSSVGEITDAELKDRRILGEEGFVSVFA
VVDSATGKVLAGPQILARGFAEDDKVFQDIQPEVVKALEDAIAGGATDTHQLQQIMRRVI
GRWVSNRLRRRPMIVPVVVEA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgagccatccccaccccgaactctccctgcctcccgagctccccaccggagggctgcgc
atcgtcgccctcggcgggctcggggaggtcggccgcaacatggccgtcctcgagtacgac
gggcgcctgctcgtcatcgactgcggcgtgctcttccccgaggacaaccagcccggcgtc
gacctcatcctcccggacttcgactacatcgcggaccggctggacgacatcgaggcgatc
gtcctcacgcacggccacgaggaccacatcggcgccgtcccgtacctgctgcgcctgcgc
cgcgacatcccgctcgtcgggtcgcagctcacgctcgcgttcgtcgaggccaagctcaag
gagcaccgcatctcgccggtgaccctcgcggtcaaggaggggcaggtcgagcagctcggc
gtgttccgctgcgagttcgtcgccgtcaaccactcgatccccgacgcgctcgcggtcgcg
gtgacgaccggtgccgggaccgtgctgcacacgggcgacttcaagatggaccagctcccg
ctcgacgggcgcatcacggacctgcgcgcgttcgcgcggctcggcgagcagggcgtcgac
ctgttcatggtcgactcgaccaacgccgaggtccccgggttcgtcacgcccgaggtcgag
atcggcccggtgctcgacaacgtcttcgccgcgtcggagaagcgcatcatcgtcgcgtcg
ttctcctcgcacgtgcaccgcgtgcagcaggtactcaacgccgcgcaccaccacgggcgc
cgcgtcgcgctcgtcgggcgctcgatggtccgcaacatgacgatcgccgccgagctcggg
tacctccacgtgcccgagggcgtgctcatcgacctcaagaaggtcgactccctgcgcgac
gacgagatcgtgctcatgtgcacggggtcgcagggcgagccgatggccgccctgtcgcgc
atggccaacggcgaccacaaggtccaggtcggccacggcgacacggtgatcctcgcgtcg
tcgctcatcccgggcaacgagaacgccgtgttccgcatcatcaacgggctcacgcgcctc
ggcgcgcgcgtcgtgcacggcggcaacgccaaggtgcacgtgtccggccacgcgagcgcg
ggcgagctcctctactgctacaacgtgctcaagcccaagaacgtcatgccggtgcacggc
gaggtccgccacctcgtcgccaacggggcgctcgcggtccgcacgggcgtgcccgccgac
cgcgtcgtgctcgccgaggacggcgtcgtcgtcgacctcgtcgacggcaaggcgtcggtc
gtcggcgcggtcccgtgcgggtacgtgtacgtcgacgggtcgagcgtcggcgagatcacc
gacgccgagctcaaggaccggcgcatcctcggcgaggagggcttcgtgtccgtcttcgcc
gtcgtggattccgcgacgggcaaggtgctcgccgggccccagatcctcgcgcgcgggttc
gccgaggacgacaaggtgttccaggacatccagccggaggtcgtcaaggcgctcgaggac
gcgatcgccggcggcgcgaccgacacgcaccagctccagcagatcatgcgccgtgtgatc
gggcggtgggtctccaaccgcctgcggcgccgcccgatgatcgtcccggtggtcgtcgag
gcctga
DBGET
integrated database retrieval system
