Campylobacter coli RM1875: YSQ_03180
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Entry
YSQ_03180 CDS
T03164
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ccf
Campylobacter coli RM1875
Pathway
ccf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YSQ_03180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccf03021
]
YSQ_03180
03019 Messenger RNA biogenesis [BR:
ccf03019
]
YSQ_03180
Transcription machinery [BR:
ccf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
YSQ_03180
Messenger RNA biogenesis [BR:
ccf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
YSQ_03180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
Spore_III_AA
Mor
ATPase_2
AAA
OB_RNB
OB_RNR_1st
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
AHK72985
LinkDB
All DBs
Position
complement(632359..633657)
Genome browser
AA seq
432 aa
AA seq
DB search
MEKEKKQHQRTHIPVEGYKIEDLKLLDLENLVKIANECEIENPREFRRQELIFEILKAQT
KKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQIRKFALRVGDIVTGQVRE
PKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTEKIKLEYDAMKLTGRILDLFT
PIGKGQRGLIVAPPRTGKTELMKELASAIAKNHPEMHLIVLLVDERPEEVTDMQRCVKGE
VFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVIILLDSITRLARAYNTATPSSGKVLS
GGVDANALHKPKRFFGAARNIENGGSLTIVATALIDTGSRMDDVIFEEFKGTGNSEIVLD
RNISDRRIYPAINIIKSGTRKEELLQGVAELQKIWAIRSAISQMDDIEALKFLYSKMLKT
KDNVELLSIMNE
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaaaaaaaacaacatcaaagaacccacattccagtggagggttataaaatt
gaagacttaaaactacttgacttagaaaacctagttaaaatagctaatgaatgcgagata
gaaaatcctagagaatttcgccgtcaagaactcatttttgaaattttaaaagcccaaacc
aaaaagggtggttttatcctttttacaggaattttagaaatttcttcagaaggttatggc
tttttaaggggtatggattcaaatttaagcgatagtgtcaatgatgcttatgtttcaaac
tcacaaattcgtaaatttgctctacgcgtgggcgatatagtaactggacaagttagagag
cctaaggatcaggaaaaatactatgctcttttgaaaatagaagcgattaattatttgcct
ttgcaagaagctaaagaaagacctttatttgataacttaactcctatttttccaacagaa
aaaatcaaactcgaatacgatgctatgaaattaactggaagaattttagatctttttacc
cctataggtaaaggacaacgcggactcatcgtagcaccgccaagaacgggtaaaacagaa
cttatgaaagagctagcaagtgcgattgctaaaaatcatcctgaaatgcatttaatcgtt
cttttagtcgatgaaagacctgaagaggttactgatatgcaaagatgtgtaaagggtgaa
gtgtttagctctacttttgatttgcctgcttataatcatgttcgcgtggcagaactagtt
atcgaaaaagcaaaaagaatggtagaaacaggcaaagatgttatcattttgctagatagt
atcacaaggcttgctagagcttataacactgcaactccaagcagtggaaaggtactaagt
ggtggggtagatgctaatgcacttcataaacctaaacgcttttttggtgcagcaagaaat
atagaaaatggcggatctttgaccatagtagcaactgcacttatcgacacaggttcaaga
atggatgatgtgatctttgaagaatttaaaggaacgggtaatagcgaaatagtcttagat
agaaatatttcagatagaagaatttatcctgcgattaatatcatcaaatctggaactcga
aaagaagaacttttacaaggagtggcagaactacaaaaaatttgggctattcgttcagcg
atttctcaaatggatgatatcgaagcgcttaaatttctttattcaaaaatgttaaaaact
aaagacaatgtagaacttttatctattatgaatgagtag
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