Campylobacter coli RM1875: YSQ_03455
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Entry
YSQ_03455 CDS
T03164
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ccf
Campylobacter coli RM1875
Pathway
ccf03420
Nucleotide excision repair
ccf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YSQ_03455
03430 Mismatch repair
YSQ_03455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccf03400
]
YSQ_03455
Enzymes [BR:
ccf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YSQ_03455
DNA repair and recombination proteins [BR:
ccf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YSQ_03455
MMR (mismatch excision repair)
Other MMR factors
YSQ_03455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_30
NopRA1
CarD_TRCF_RID
DUF3553
Motif
Other DBs
NCBI-ProteinID:
AHK73040
LinkDB
All DBs
Position
complement(683865..685925)
Genome browser
AA seq
686 aa
AA seq
DB search
MNLFTGLNESQKEAASHIDGPMLILAGAGSGKTKTITTRLAYMIGEVGIPAINTLTLTFT
NKAASVMKNRALSLLNSNENPLLCTFHKFGLLFLKLHIERLGRKNNFIIIDNDDSKKILK
ELINDDKTSPHQILQFISHFKNESKSVQDVFNDLELLKDNEIKHQALQKIAIYYQNYQEY
LLKHNFVDFDDLLLLTNILLENDQNFAKEQSSFYRYITVDEYQDTNALQYKILKNLCCVH
ENICVVGDDDQSIYSWRGAKIENILNFQSEFSNVKLVKLEQNYRSVGMILKAANNLISHN
KKRLGKTLLCTKDEGEDIQILSSDNEKIESALVAKKIKELLNSGIYAGEIAVLFRINALS
RSIEEAFMKEKIPYKLLSGMRFYERLEIKDLICYFRILINPNDDLSFKRIINRPKRSIGE
KALQNLEDYAQKRKISLFEALCESDGGVGIFSLKKAQNEAKKFIQNIYKLREYSDLKKMI
EKFEELFALKEFYALQEDGDERVLNIDEFYASIKEKIKEEPQTTLEDILSEISLLSDQDG
IEGECVYLMSVHASKGLEFDHVFIVGLEEGFFPLNESDIEEERRLAYVAITRAKKCLSLS
IAKSRFYRGSRTELDSSRFLEESQLTKKISINKTEQGYHKGDLVKHKIFGIGRVISVNKS
AKEEKLTINFGGIERIIMASFVEKAV
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacaggtttaaacgaaagtcaaaaagaggctgcaagtcatatcgatggc
cctatgcttatactagcaggtgcgggtagtggaaaaaccaaaacaattacaacgcgtctt
gcctatatgattggggaagttggaattcctgctatcaataccctaaccctaacctttaca
aacaaggctgcaagtgtgatgaaaaatagagccttaagccttcttaatagcaatgaaaat
cctttactttgcacttttcataaatttggcttattgtttttaaaactccatatagaaaga
ttaggaagaaaaaataattttattatcatcgataatgatgattctaaaaaaattttaaaa
gaactcattaatgatgataaaactagccctcatcaaattcttcagtttatatcacacttt
aaaaatgaaagtaaaagtgttcaagatgtatttaatgatctagaattgttaaaagataat
gaaatcaaacaccaagccttgcaaaaaattgctatttattatcaaaactatcaagaatat
ttactcaagcacaatttcgtagattttgatgatcttttacttttgaccaatattcttttg
gaaaatgatcaaaatttcgccaaagagcaaagctctttttatcgttatatcacagtcgat
gaatatcaagataccaatgctttacaatacaaaattcttaaaaatctttgctgcgttcat
gaaaatatatgcgttgtaggtgatgatgatcaaagcatttatagttggcgtggtgcaaag
atagaaaatattttaaatttccaaagtgaattttcaaatgtaaaacttgttaaattagag
caaaattatcgttctgtgggtatgattttaaaagctgctaataacctaatatcacacaat
aaaaaacgtcttggaaaaaccctactttgcacaaaagatgagggtgaagatattcaaatt
ctaagttcagataatgaaaaaatcgaaagtgcattggtggctaaaaaaatcaaagagctt
ttaaattcgggcatttatgctggagaaattgctgttttatttcgtatcaatgctctttca
agatccatagaggaagcctttatgaaggaaaaaattccttataaattgctaagcggaatg
cgtttttatgaaagacttgaaatcaaagatctcatttgctattttagaattttaatcaac
cctaatgatgatttatcctttaaacgcattatcaataggcctaaaagaagcataggtgaa
aaagctttacaaaatttagaagattatgcacaaaaaagaaaaatttcactctttgaagca
ttgtgcgaaagcgatggcggtgtgggaattttttctcttaaaaaagcacaaaatgaggca
aaaaaattcatacaaaatatttacaaacttagagaatattctgatttaaaaaaaatgatt
gaaaaatttgaagaactttttgctcttaaagaattttacgctcttcaagaggatggcgat
gagcgcgtattaaatattgatgaattttatgcaagcatcaaagaaaaaataaaagaagaa
ccacaaacaaccctagaagatattttaagtgaaatttcactgttaagcgatcaagatggg
attgagggagaatgtgtatatcttatgagtgtgcatgcgagcaagggtttggaatttgat
catgtatttatagtaggacttgaagaaggattttttcctttgaatgaaagcgatatagaa
gaagaaagacgccttgcttatgtggctatcactcgcgctaaaaaatgtctatcgctaagc
attgcaaaatctcgtttttaccgaggaagtcgcacggaattagactctagtcgtttttta
gaagaaagtcaattaacaaaaaaaatctctataaacaaaaccgaacaaggatatcataaa
ggagatctagtcaaacataaaatttttggcataggacgcgttattagtgtcaataaaagc
gcaaaagaagaaaaacttaccataaattttggcgggatagaacgcattattatggcaagt
tttgtggaaaaagccgtatga
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