Campylobacter coli RM1875: YSQ_03560
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Entry
YSQ_03560 CDS
T03164
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccf
Campylobacter coli RM1875
Pathway
ccf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YSQ_03560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccf03400
]
YSQ_03560
Enzymes [BR:
ccf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YSQ_03560
DNA repair and recombination proteins [BR:
ccf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
YSQ_03560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
UB2H
Lipoprotein_7
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AHK73059
LinkDB
All DBs
Position
704907..707843
Genome browser
AA seq
978 aa
AA seq
DB search
MQANFFEYLQDSNIAQLVLCEDDKESFLLSQVALFKDLKTFVLPDFRAEFGDDLRAFSKE
LFELCKVLNAYHKEKDTKILISPLSTILKKLPGQKHLKNYKLSKKNVFNLSEFKNELNKL
GYEFVDMVQDKGEVSIRGEIIDIFCINEELPTRVLLFGDELESIRKFDPMNQKSFPKEYE
ELEICPFLTYFSEENYENFKDKLENFNSDVLINDINSLGFWCINDFCDYLELDFISIKKF
NQEEWDKDLSKINAKIIPQASVYKDLKSSYNKDFFSLQQNKKITILAKNEALFKALELEN
TQNISFQKSDLILNLISNQELIISLNHKEKQKYKRKANLIIDELKIGDFIVHEDYGVGKF
LGLEMISISGAKKEFVAIEYQNSDKLLLPVENLYMIDKYLGASGGIPLLDRLGKMTFIRL
KERLKTKLLAIASEIVIMAAKRALIKPKEIKIDYADQAYFVSKAGFSYTQDQNKACEEIL
NDFENGKVMDRLLSGDVGFGKTEVVMNAIYPVVKSGFCAFFFAPTTLLSHQHYKSLKKRF
EPFGIEVFKLDRFTSTKEKKTLMLNLEQNKACVVIGTHALLNVECENLALVIIDEEHKFG
VKQKEKLKELTQNSHLLSMSATPIPRSLNQALSSIKSYSVLQTPPEDRLDVRTFVKENDD
ALLKEAITRELRRGGQIFYIHNHIASIEQCKKHLLDLFKNLRILILHSKIDAKIQEEEML
KFENKEYDLLLSTSIVESGIDLPNANTMIVERSDRFGMADLHQLRGRVGRSDRQGYCYFL
VENKEELTQDALKRLVSLESNSYLGAGSVLAYHDLEIRGGGNLLGIDQSGHIEQIGLSLY
LKMLEDELNALTKKESFEEKKIDLKLTINAFLNSELINEDRLRLELYRRLSKCKNIDEVY
EIEGEIEDRFGKLDLYTKQFLTLIIIKILALGKFKTISNFEQNIQFVKIDDEKEFIKARS
KDDDDIIEAVLTHLRKDK
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcaaatttttttgagtatttacaagattcaaatatagcacaattagtgctttgc
gaagatgataaagaatcttttttgctttctcaagttgctctttttaaggatctaaaaacc
tttgttttacctgattttagagctgaattcggagatgatttaagggctttttccaaggag
ctttttgagctttgcaaggttttaaatgcttatcacaaggaaaaagatactaaaattctt
atttcccctttgtctaccatacttaaaaaattacccggtcaaaaacatttaaaaaattac
aaactttctaagaaaaatgtttttaatttaagtgaatttaaaaatgagctcaacaagctt
ggatatgaatttgtggatatggttcaagataagggtgaggtaagtatacgcggagagatt
attgatatattttgtatcaatgaagaattacctactagggttttgctttttggagatgag
ttagaaagcattagaaaatttgatcctatgaatcaaaaatcatttcccaaagaatatgaa
gaacttgaaatttgtccttttttgacatatttttctgaggaaaattatgaaaattttaaa
gacaaattagaaaatttcaatagcgatgttttgattaatgatattaattctttaggattt
tggtgtattaatgatttttgtgattatttagaacttgattttataagtatcaaaaaattc
aatcaagaagaatgggataaagatcttagcaaaatcaatgctaaaattataccccaagcc
tctgtttataaggatttaaaaagttcttacaataaagacttcttttctttgcaacaaaat
aaaaaaattacgattttggctaaaaatgaagctttgtttaaggctttagagcttgaaaat
acacaaaatatttcttttcaaaaaagcgatttgatccttaatttaattagcaatcaagaa
cttatcatctcattaaatcataaagaaaaacaaaaatataagcgtaaagcaaatttgatt
atagatgagttaaaaattggtgattttatcgttcatgaggattatggtgtgggtaaattc
ttaggtcttgaaatgattagcattagtggggctaagaaagaatttgttgccattgaatat
caaaatagcgataaacttcttttaccggttgaaaatctttatatgatagataagtattta
ggagctagtggaggcataccgcttttagatcgcttgggaaaaatgacttttatcaggcta
aaagaaaggctaaaaaccaagcttttggctattgcttctgagattgttattatggcggct
aaaagagctttaattaaaccaaaagaaatcaagatagattatgcagatcaagcttatttt
gtttcaaaagctggattttcttatacacaagatcaaaataaggcttgtgaagaaatttta
aacgattttgaaaacggcaaagtgatggatagacttttaagcggtgatgtgggttttggt
aaaaccgaagttgtgatgaatgctatttatcccgtggtaaaaagcggtttttgtgctttt
ttctttgcgcctaccacgcttttatctcatcagcattataagagtttaaaaaagcgtttt
gagccttttggcattgaagtttttaaactggatcgctttacaagcactaaagagaaaaaa
actttaatgttaaatttagaacaaaacaaagcctgcgtggtgattggcacccacgcactt
ttaaatgtagaatgtgaaaatttagcccttgttatcattgatgaggagcataaatttgga
gtaaaacaaaaagaaaaattaaaagaattaacccaaaattctcatcttttatctatgtct
gctactcctataccaaggagtttaaatcaagctttaagctctataaaatcttatagtgtt
ttacaaacccctccagaagataggcttgatgttagaacctttgtgaaagaaaatgatgat
gcgcttttaaaagaggctataacaagagaattaagacgcggcggacaaattttttatata
cacaatcatattgcaagtatagagcaatgtaaaaaacatttacttgatttatttaaaaat
ttaaggattttgattttgcattctaaaattgatgcgaagattcaagaagaagaaatgctt
aaatttgaaaacaaagaatacgatttacttttaagcacttctattgttgaaagcggtatt
gatctgcctaatgcaaatactatgatagtcgaaagaagtgatagatttggaatggctgat
ttgcaccaattacgcggccgtgtaggcaggagtgataggcaggggtattgttatttttta
gttgaaaataaagaagaacttactcaagatgcacttaagcgtcttgtttctttagagagt
aattcttatttaggagcaggttcagttttagcttatcatgatcttgaaattcgcggaggt
ggaaatttgctaggtatcgatcaaagcggacacatagagcaaattggacttagcttgtat
cttaaaatgctagaagatgagttaaatgcacttactaaaaaagaaagctttgaagagaaa
aaaatagacttaaaacttaccatcaatgcttttttaaattcagaacttatcaatgaagat
cgtttaagattggagctttatcgtagacttagtaaatgtaaaaatatagatgaagtctat
gaaattgaaggtgagatagaggatcgctttgggaaattagatctttatacaaagcagttt
ttaacattgattataattaaaattttagctttggggaaatttaaaaccataagtaatttt
gagcaaaatatacaatttgtaaaaattgatgacgaaaaagagtttattaaagcaagaagc
aaagatgatgatgatattatagaagcagttttaacgcatttaaggaaagataaataa
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