Campylobacter coli RM1875: YSQ_05760
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Entry
YSQ_05760 CDS
T03164
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ccf
Campylobacter coli RM1875
Pathway
ccf03030
DNA replication
ccf03430
Mismatch repair
ccf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YSQ_05760
03430 Mismatch repair
YSQ_05760
03440 Homologous recombination
YSQ_05760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccf03032
]
YSQ_05760
03400 DNA repair and recombination proteins [BR:
ccf03400
]
YSQ_05760
Enzymes [BR:
ccf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YSQ_05760
DNA replication proteins [BR:
ccf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
YSQ_05760
DNA repair and recombination proteins [BR:
ccf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
YSQ_05760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
ACT_ACR9_3rd
T2SSK
Motif
Other DBs
NCBI-ProteinID:
AHK73464
LinkDB
All DBs
Position
complement(1100412..1104014)
Genome browser
AA seq
1200 aa
AA seq
DB search
MSQFTHLHLHTEYSLLDGANKLKELAKTLKEQGATSVAMTDHGNMFGAIDFYQTMRSEGL
KPIIGLEAYLHNHEDISDKSSRQRFHLCLYAKNEVGYQNLMYLSSQSYIKGLYYYPRINK
KLLEEHSEGLICSSACLQGEVNWHLNIHSERNVRFGAKGYEAAKEAALWYKKVFGDDFYF
EIMRHGIGDQRAIDDDIIRLSKELNIKIIATNDTHYTFKERATAHEVFMCIAMGKKLNDP
DRLRHSVHEFYVKSPAQMSELFADIPEAIENTQEIANKCNLELNLGNPTPPNFKFTREYA
KEYNISLPEEGKEFSFDNDDVVFDELCKKGLEERLKFVDISKHEEYKTRLEVEINIIKKM
KFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVAYSLKITDLDPIPYSLLFERFLNPE
RVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLARGVIRDVARVCDMSIPD
ADELAKLIPEELKITLDAAYEKEPKIKEFIERHPKGPEVWEYAKALEGLNRNAGMHAAGV
VISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTLINNAIKLIK
KRYNKDIVWEAIDVNDAKVYKTIQNGNTLGIFQIESGGMQNLNARLKPERFEDIIAVLAL
YRPGPMESGMLDDFIDRKHGLKKIEYPFDTLESVLEPTYGVIVYQEQVMQIVQIIGGFSL
GGADVVRRAMGKKDPEKMKKLKSEFADGAEKQGYDRVKAEELWELIVKFAGYGFNKSHSA
AYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSVNKAIRE
FSAVEQEDGKDAIVYGLGAIKSVGIPAVENLLEARERGEFKNIDDFLSRIEPTKINKRTL
ESLIKAGAFDEFGYTRKCLFDNMDNLTEGSKKMADARKNAASSLFGEDELTVGLQVNIVA
KNEEFEVMEKLEFEKEILGIYVSGHPLDRFYDKFKEIDYVKSIDFSTLKGSGEILSIGKI
ESFKSMMSKNNKRYGRLEILDFYSTFEVTVFESNIEEIENILKNEASKNEAYGFLLSYKA
EEGKLDSLALRSIKTLEELQEGEIKAVKKFNAKKNTQENKDFIAEPKEFENNIIELDLSR
LNRELVYEIHEIARSAHNPNEKGNKKLVLKIVSTGSCLLYHTDFVISDSVSEKIINKYAG
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgagccaatttacccatcttcatttgcatacagaatattctttacttgatggagccaat
aagcttaaggaattagctaaaacccttaaagagcagggtgctacaagtgtagccatgaca
gatcatggtaatatgtttggagcaattgatttttatcagactatgcgttctgagggatta
aaacccatcataggtcttgaagcgtatttgcataatcatgaagatatttcagataaaagc
tcgcgtcaaagatttcatctttgcttatatgcaaaaaatgaggttggttatcaaaattta
atgtatctaagttctcaaagctatatcaagggtttgtattattatccacgtatcaataaa
aagcttttggaagagcatagcgaagggcttatctgttcttcggcttgcttgcaaggtgag
gtaaattggcatttaaatattcatagtgaaagaaatgttcgttttggagccaagggttat
gaagcggctaaggaagcggctttatggtataaaaaagtttttggcgatgatttttatttt
gaaattatgcgtcatggtataggagatcaaagagccatagacgatgatattataagactc
tcaaaagaattgaatattaaaattattgctacaaatgatacccattatacttttaaggaa
agagcgactgcccatgaagtatttatgtgtattgctatgggcaaaaagctgaatgatcct
gatcgtttacgccatagtgttcatgaattttatgtcaaatctccagcgcaaatgagcgag
ctttttgctgatatacctgaagctattgaaaatactcaagaaattgctaataaatgtaat
ttagagctaaatttaggaaatcccactccgccaaattttaaattcacaagagaatatgca
aaagaatataatataagcttgcccgaagagggcaaagaatttagttttgataatgatgat
gtggtgtttgatgagctttgcaaaaaaggacttgaggaaaggctaaaatttgttgatata
agcaagcatgaagaatataaaacaaggctcgaagtcgaaatcaatatcataaaaaaaatg
aaattttcaggctatatgctaatcgttcatgattttatcaaagtggctaaagataaagga
attcctgtaggtcctggaaggggttcagctgcgggtagtttggtcgcttattctttaaaa
atcacggatttagatcctattccttatagtttgctttttgagcgttttttaaatccagaa
cgcgtatcgatgcccgatattgatgtggatttttgtcaagatagacgcgcagaagtgatt
gattatgtgattgataaatacggagccgataaggttgcacaggttattacttttggtaag
cttttggctcgtggagtgattcgtgatgtggcaagggtttgtgatatgagtattcctgat
gcagatgaacttgccaagcttatacctgaagaacttaaaatcactcttgatgcagcttac
gaaaaagaaccaaagattaaagaatttatagagcgtcatccaaagggtcctgaagtttgg
gagtatgctaaggctcttgaaggactcaatagaaatgcaggtatgcacgcagcaggtgtt
gtgatttctaatgaaagtttatggaaaaaaactcctctttttagacagagtaaaaacgat
gaaagacatttagttacacaatactctaaagatcatttagaggatgtagacttaatcaaa
tttgatttcttgggtttaaaaactttaactttgatcaacaatgctattaaactcattaaa
aagcgttacaataaagacatagtctgggaagctatcgatgtaaacgatgctaaagtttat
aaaaccatacagaatgggaataccttaggaatatttcaaatagaatcaggcggaatgcaa
aacttaaatgcaagattaaagcctgagcgttttgaagatattatcgcggttcttgctctt
tatcgcccaggtcctatggaatcaggaatgcttgatgattttatagataggaaacatggg
cttaaaaagatagaatatccatttgatactcttgaaagtgtattagagcctacatacggg
gttattgtctatcaagagcaagttatgcaaattgttcagattataggaggattttcacta
ggtggtgctgatgtggtgcgccgcgctatgggtaaaaaagatcctgaaaaaatgaaaaaa
ttaaaaagtgaatttgctgatggtgctgaaaagcagggttatgatagagtaaaagccgaa
gagctttgggaattgattgttaaatttgcaggatatggttttaacaaatctcactctgcg
gcttatgccttgatcacttttcaaacagcgtacttaaaaacctactatcctagtgaattt
atggcagcattgctaacaagtgaagaaaataatgtcgataaaatcgctgtttatatcgat
gaaatgaaaaaaatgaatatcaaacttcttccaccttctgttaataaagccatacgcgaa
tttagtgcagtagagcaagaagatggtaaagatgctattgtttatggacttggagctatt
aaaagtgtgggaattcctgcagttgaaaatttactcgaagcaagagagcgaggcgaattt
aaaaatattgatgattttttaagcaggatagagcctacaaagatcaacaaaagaacccta
gaaagtcttatcaaagcgggtgcttttgatgaatttggctatacgagaaagtgcttgttt
gataatatggacaatttaaccgaaggctctaaaaaaatggccgatgcaagaaaaaatgca
gcaagttctctttttggagaagatgaattaactgttggtttgcaagttaatatagtggct
aagaatgaagaatttgaggttatggaaaaacttgaatttgaaaaagagattttgggaatt
tatgtttcaggacacccactcgatcgtttttatgataaatttaaggaaatagattatgta
aaaagtatagatttttcaacacttaaaggcagtggagaaattttaagtataggaaagatt
gaaagctttaaatctatgatgagtaaaaataataagcgttatggcaggcttgagatattg
gatttttattctacttttgaagtgacggtttttgagtctaatatagaagagattgaaaat
attttaaaaaatgaagcctctaaaaatgaggcttatggatttttattaagctataaagca
gaggagggcaaattagatagcttggctttaagatcaattaaaactctagaggagcttcaa
gaaggagagattaaggcggtaaaaaaatttaacgccaagaaaaatactcaagaaaataaa
gattttatagcagagcctaaagaatttgaaaacaatattatagaacttgatctttcaaga
ttaaatcgagagcttgtttatgaaattcacgaaatagcaagaagtgcacataatccaaat
gaaaaaggcaataaaaagcttgtcttaaagatcgttagcactggttcttgcttgctttat
catactgattttgttatttctgatagtgttagtgaaaaaattatcaataaatatgcaggg
taa
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