Campylobacter coli RM1875: YSQ_07445
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Entry
YSQ_07445 CDS
T03164
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccf
Campylobacter coli RM1875
Pathway
ccf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
YSQ_07445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccf03021
]
YSQ_07445
03400 DNA repair and recombination proteins [BR:
ccf03400
]
YSQ_07445
Enzymes [BR:
ccf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
YSQ_07445
Transcription machinery [BR:
ccf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
YSQ_07445
DNA repair and recombination proteins [BR:
ccf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
YSQ_07445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF7660
Motif
Other DBs
NCBI-ProteinID:
AHK73772
LinkDB
All DBs
Position
complement(1395652..1400202)
Genome browser
AA seq
1516 aa
AA seq
DB search
MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPETINYRTLKPERDGLFCA
KIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGVKMKDLERVLYYEAYIVENAGDAYYDNESTKKVEYCDVLNEEQYQNLMQR
YENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMAATNSEAKKKTIIKRLKVVENFLNS
NLNANTNNEDAVPNRPEWMMITNLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNTR
LKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRF
RQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPKKMALELFKPHLLAKLEEKGYATTVKQAK
KMIENKTNEVWECLEEVVKGHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFN
ADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGKSVTVPSQDMVLGIYYLSLEKM
GAKGSHKICTGIDEVMMALESKCLDIHASIQTMVDGRKITTTAGRLIIKSILPDFVTENM
WNKVLKKKDIAALVDHVYKQGGLQTTASFLDKLKNLGFEYATKAGISISIADIIVPNDKQ
KAIDEAKKQVREIQNSYNLGLITSGERYNKIIDIWKTTNNTLSRDMMKLVEKDKEGFNSI
YMMADSGARGSAAQISQLAAMRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKG
LADTALKTANAGYLTRKLIDVAQNVKITVEDCGTHEGVEINEITADSSIIETLEERILGR
VIAEDVIDPITNSVLFTEGTLMDEEKARILGESGVKSVNIRTPITCKAKKGICAKCYGIN
LGEGKLVKPGEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYN
LKTYKNKEGKDIVANRRNAAILLVEPKIKAPFKGIINIENIHEDVIVSIKDKKQEAKYIL
RKYDLAKPNELAGVSGSIDGKLYLPYQSGAEVEENESIVEMIKEGWNVPNRIPFASEILV
KDGDPVVQNIKAGEKGILKFYILKGDGLDRVRNIKKGDIVKEKGFFVVVADENDREAKRH
YIPRESRIEFNDSEEVNFDSIIASAPKQEKSVIAEWDAYNNTIIAEIDGVVSFEDIEAGY
SADEQIDEATGKRSLVINEYLPSGVRPTLIIAGKGDKAVRYQLEPKTVIFVHDGDKISQA
DILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERLIIQ
AEDGTSAEYLIDKSKHIQVREGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISEIQQ
VYRGQGVVISDKHIEVIVSQMLRQVKIINSGHTKFIEGDLVSRRKFREENERILRLGGEP
AIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIPV
GTGLYGEQNLKLKEQE
NT seq
4551 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatttaaagtaatagaaataaaagaagatgcaagacctagggattttgaagca
tttcaacttagacttgcaagtcctgaaaaaattaaatcttggtcttatggtgaagtaaaa
aagccagagactattaattatagaactttaaaaccagaaagagatgggcttttttgcgct
aaaatttttggacctattagagattatgaatgtctttgtggtaaatacaaaaaaatgcgc
tttaaaggcgttaagtgtgaaaaatgtggagttgaagttgcaaattcaaaagttcgtcgc
tctagaatggggcatattgaacttgtaaccccagtagctcatatttggtatgttaattct
cttccaagtcgtataggaacacttctaggtgttaaaatgaaggatcttgaacgcgtactt
tattatgaggcttatatcgtggaaaatgcaggagatgcgtattatgataatgaaagcacc
aaaaaagtagaatactgcgatgtattaaatgaagaacaatatcaaaatttgatgcagcgt
tatgaaaatagtggctttaaagcaagaatggggggcgaagtagtccgtgacttgctagca
aatttagatcttgtggcgcttttaaatcagcttaaagaagaaatggctgctacaaattca
gaagctaagaaaaaaaccattataaagcgtttaaaagttgtagaaaacttcttaaattca
aatttaaatgcaaatacaaataacgaagatgcagtaccaaatcgtcctgaatggatgatg
attacaaacttacctgtattgccacctgatttgcgtcctttggttgctttagatgggggt
aaatttgcagtttctgatgtaaatgatttataccgccgtgttattaacagaaatacacgt
cttaaaaaacttatggagcttgatgcgcctgaaattattatcagaaatgaaaaaagaatg
ctacaagaagctgtagatgcactttttgataatggtcgtcgtgctaatgcagttaaagga
gcaaacaaacgcccgttaaaatctttgagtgaaattatcaaaggtaaacaaggtcgtttt
agacaaaacttgctaggtaaaagggtggatttttcaggtcgtagcgttattgttgtagga
ccaaaacttagaatggatcaatgtggcttacctaaaaaaatggctttagaacttttcaag
ccacatttattggctaagcttgaagaaaaaggttatgccactacagtaaaacaagctaaa
aaaatgatagaaaacaaaactaatgaggtttgggaatgtttagaagaggtggtaaaaggg
catcctgttatgttaaaccgtgctccaactctacataaactttctatccaagctttccat
cctgttttagttgaggggaaggcaatacaactccatcctttagtttgtgcagcatttaac
gcggattttgatggtgaccaaatggcggtgcatgtgccactttctcaagaagcgatcgca
gaatgtaaggttttaatgctttcttctatgaatattcttttgcctgcaagtggaaagtct
gtaactgtaccttctcaagatatggttttaggaatttattatctttctttggaaaaaatg
ggtgcaaaaggttcacataagatatgcacaggcattgatgaagtaatgatggcccttgaa
agtaaatgccttgatattcatgctagcattcaaactatggttgatggtagaaagattact
acaacagcaggaagacttattattaaatctattttacctgattttgttactgagaatatg
tggaataaggttttaaaaaagaaagatattgctgcacttgtggatcatgtatataaacaa
ggtggtttacaaactactgcaagctttttagataaacttaaaaatttaggttttgaatat
gcgactaaggcaggtatttctatatctatcgctgatattatcgttcctaatgataaacaa
aaggctattgacgaggctaaaaagcaagtaagagaaattcaaaattcttataatcttggt
ttgatcacttcaggtgaaagatataacaaaattattgatatttggaaaaccactaacaat
actctttcaagagatatgatgaagcttgttgaaaaagataaggaaggctttaattctatc
tatatgatggcagattcaggtgctagaggtagtgcagctcaaatttctcagcttgctgct
atgagaggacttatgactaagcctgatggttcgatcatcgaaacgcctattatttcaaat
ttccgtgaaggtttgaatgttcttgagtattttatctcaactcacggggctagaaaaggt
ttggcagataccgctcttaaaacagcaaatgcaggttatttgacaagaaaacttatcgat
gtagcacaaaatgtaaaaattactgttgaagattgtggaacacatgagggtgttgaaatc
aatgagatcactgcagatagttctattatagaaaccttggaagaaagaattttaggcagg
gttatagctgaagatgtaatcgatcctattacaaattctgtgctttttacagaaggtact
ttaatggatgaagaaaaagccagaatactaggtgaaagtggtgtgaaaagcgtaaatatt
cgcactccaatcacttgtaaggctaaaaaaggaatttgtgcaaaatgttacggaattaac
ctaggtgaaggtaagcttgttaaaccaggtgaggcagtaggtatcatttctgctcagtct
attggtgaaccaggaactcagcttacacttagaactttccacagcgggggaactgcaagt
acagatttacaagatagacaggtaagcgcccaaaaagaaggttttataagattttataat
cttaaaacttataaaaataaagagggaaaagacatagtggctaatcgtagaaatgcggct
attttacttgtagagccaaaaattaaagcaccatttaagggtattatcaatatagaaaat
atccacgaagatgtaattgtttctataaaagataaaaaacaagaagcaaaatatattctt
agaaaatacgatcttgctaaaccaaatgaattagcgggcgttagcggaagcattgatgga
aagctttatttaccgtatcaaagcggtgctgaagttgaagaaaatgaaagtattgttgag
atgattaaagagggttggaatgtgccaaaccgtattccatttgcaagtgaaattcttgta
aaagatggggatcctgttgtgcaaaatatcaaagcaggggaaaaaggaattttaaaattc
tatattcttaagggcgatggacttgatagggttagaaatattaaaaaaggcgatatagta
aaagaaaaaggattttttgttgtagttgctgatgaaaatgatagagaggcaaaaagacat
tacatcccaagagagtcaagaatagaatttaatgatagcgaagaggttaattttgattct
ataatcgctagtgcgccaaaacaagaaaagtcagttattgcagaatgggatgcttataat
aatactatcattgcagagattgatggtgtggtaagttttgaagatatagaagcaggttat
agtgcagatgagcaaatcgatgaggcaacaggcaagcgctcgctagtgatcaatgagtat
ttaccaagcggagtaagaccgactttgataattgcaggtaaaggtgataaagcagtgcgt
tatcagttggagccaaaaacggttatttttgttcatgatggtgataaaatttctcaagca
gatattttggcaaaaactccaaaagcagcagcgaaatcaaaagacattaccggaggtctt
ccaagggtttcagagctttttgaagcaagaaaaccaaaaaatgcagcagtaattgcagag
attgacggtgtggttcgttttgataagcctttacgctcaaaagaaagattgattatccaa
gcagaagatggcacaagcgcagaatatttgatcgataaatcaaaacatattcaagtaaga
gaaggtgaatttattcacgcaggtgaaaagctaactgatggagtagtttcaagtcacgat
gtgcttaaaattttaggcgaaaaagccttgcattattacttgatttctgaaattcaacaa
gtataccgaggtcaaggggttgttatttctgataagcatattgaggttatagtttctcaa
atgttaagacaggttaaaattattaatagtggacatactaaatttatcgaaggggatttg
gtttcaagacgcaaattccgcgaagaaaatgagcgaattcttagattgggcggagaacca
gctattgccgaacctgtacttttaggtgttacaagagcagcgataggcagtgatagtgtg
atttctgcagcttcattccaagaaacaacaaaagtactcactgaagcaagtatcgcaggt
aaatttgactacttagaagatttaaaagaaaatgttattctaggtagaatgattcctgtt
ggaacagggctttatggcgaacaaaatttaaaacttaaagaacaagaataa
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