Campylobacter coli RM1875: YSQ_09625
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Entry
YSQ_09625 CDS
T03164
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ccf
Campylobacter coli RM1875
Brite
KEGG Orthology (KO) [BR:
ccf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccf03032
]
YSQ_09625
03400 DNA repair and recombination proteins [BR:
ccf03400
]
YSQ_09625
Enzymes [BR:
ccf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
YSQ_09625
DNA replication proteins [BR:
ccf03032
]
Prokaryotic type
DNA Topoisomerases
YSQ_09625
DNA repair and recombination proteins [BR:
ccf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
YSQ_09625
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Toprim_2
DUF1272
TRAFD1-XIAF1_ZnF
Zn_ribbon_RPB9
Motif
Other DBs
NCBI-ProteinID:
AHK74165
LinkDB
All DBs
Position
complement(1776984..1779086)
Genome browser
AA seq
700 aa
AA seq
DB search
MKKNLIIVESPAKAKTIGNFLGKEYEVIASKGHIRDLPKSSFGIKIENDEFIPEYRITSD
HSVLVKELKEKAKGAKEIYLATDEDREGEAIAYHIAKAIGKDENVLPRIVFHEITKNAIE
NALKNPRKLDMNSVNAQQTRRLLDRIVGYKLSPLLGQKIQRGLSAGRVQSAALKIIVDRE
KEIRAFVPLEYFSIDMIFQKDLNAELVEFDKAKIEKLTLTNKDRAKLVFEACKNENYAIS
DIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTMMIAQKLYEGVNTHEGVMGVITYMR
TDSLNLAKEAVENARKFIQANFGKDYLPTKANVYTTKAKGAQEAHEAIRPTNLNFTPEIA
AKFLDKDELKLYTLIYNRFLACQMNPAISQTQNVFVKNDRAVFKISGRKILFDGYYKVYG
DMDKDKILPNFKIGENLKIQNLEMNSHFTEPPSRYSEAGLVKKLESLGIGRPSTYAPTIS
ILTSRDYVKIDKKQLIPSEVAFSVTEVLEKNFSDIVDSKFTSNLENTLDEIAEDKANWQE
TLKEFYYPFMRKVEEGKTKIASQKTVTKLGENCPDCGGELAIRKGRFGEFVACLNFPKCK
YSRNLKNESKNEAEVSVSKAKAKGIGITCPSCKEGEIVERLSKRGKFYGCSAYPKCNFIS
KYKPSDEKCEECGENLVIKELKKGTFLECLKCKIKKEIKD
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaatttgatcatagtcgaatctcctgcaaaagcaaaaactataggcaatttt
ttgggcaaagaatatgaagtcatagcttctaaagggcatataagagatttacctaaatca
agttttggtataaaaatagaaaatgatgaatttatccctgagtatagaatcacaagcgat
catagtgttttagttaaagaacttaaggaaaaagcaaagggagcaaaagagatttattta
gcaaccgatgaggatagagaaggagaggctatagcctatcatattgcaaaagctataggc
aaagatgaaaatgtcttaccgcgtatcgtttttcatgagattaccaaaaatgctatcgaa
aatgctttaaaaaatcctagaaaacttgatatgaattctgttaatgctcagcaaactagg
cgtttattagatcgtattgtaggatataaattaagtcctttgctagggcaaaaaattcaa
agaggcttaagcgcgggccgtgttcaaagtgcagctttaaagatcatagtcgatcgtgaa
aaagaaattcgtgcttttgttcctttggaatattttagtatagatatgatatttcaaaag
gatttaaatgcagaacttgtcgaatttgataaagcaaagatagaaaagcttactcttaca
aataaagatcgtgcaaagcttgtttttgaagcgtgtaaaaatgaaaattatgctataagc
gatatagaaagcaaagaaagaaaaattgctccacctccaccttttatgacttcaacctta
caacaaagtgcaagcaatcgtttgggatttaaccctaaaaaaactatgatgatagctcaa
aaactttatgagggagtaaatactcatgagggtgtgatgggggttattacttatatgaga
accgatagtttaaatttagccaaagaagcagtagaaaatgcaagaaaattcatacaagca
aattttggcaaagactatcttccaaccaaagcaaatgtttatactacaaaagctaaaggc
gctcaagaagctcatgaagctatacgccctactaatttaaattttactccagaaatcgca
gctaaatttttagataaagacgagttaaagctctatacgcttatctataatcgtttttta
gcttgtcagatgaatcctgctatctctcaaactcaaaatgtttttgtaaaaaatgacaga
gcagtgtttaagataagtggtaggaaaattctttttgatgggtattataaagtttatggt
gatatggataaggataaaattttaccaaattttaaaataggtgaaaatttaaaaatacaa
aatttagaaatgaactcacattttacagaacctccttcaagatattccgaagctggactt
gtgaaaaaacttgaaagcttaggcataggtcgcccttcaacttatgcgccgactatttct
atactcacaagccgtgattatgtaaaaatcgataaaaaacaactcattcctagtgaagtc
gcttttagtgtaactgaagtgcttgaaaagaatttcagtgatatagtagatagtaaattt
acttcaaatcttgaaaatactttagatgagattgcagaagataaagctaattggcaagaa
actttgaaagaattttattatccctttatgaggaaggttgaagaaggaaaaacaaaaatt
gcaagccaaaaaacggtgactaaattgggtgaaaattgccctgattgtggtggtgaactt
gcgattagaaaagggcgttttggagaatttgtagcttgtttaaattttccaaaatgcaaa
tactcaagaaatttaaaaaatgaaagcaagaatgaagctgaagtaagtgttagcaaggct
aaagcaaagggcataggcattacttgtccaagttgcaaagagggtgagatagtagagcgc
ctttcaaaacgcggtaaattttatggttgtagtgcttatccaaaatgtaattttataagt
aaatataaaccaagcgatgaaaaatgtgaggaatgtggagaaaatttagtgataaaagag
ctaaaaaaaggcacattcttagaatgtttaaaatgcaaaattaaaaaagaaataaaggat
taa
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