Chlorobium chlorochromatii: Cag_0358
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Entry
Cag_0358 CDS
T00290
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cch
Chlorobium chlorochromatii
Pathway
cch03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cch00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cag_0358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cch03021
]
Cag_0358
03400 DNA repair and recombination proteins [BR:
cch03400
]
Cag_0358
Enzymes [BR:
cch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cag_0358
Transcription machinery [BR:
cch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cag_0358
DNA repair and recombination proteins [BR:
cch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cag_0358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Redoxin
Motif
Other DBs
NCBI-ProteinID:
ABB27631
UniProt:
Q3ATP4
LinkDB
All DBs
Position
407046..411554
Genome browser
AA seq
1502 aa
AA seq
DB search
MILSQGTSPLKGDFSRIKFSIASPESILAHSRGEVLKPETINYRTFKPERDGLMCEKIFG
PTKDWECYCGKYKRVRYKGIICDRCGVEVTTKSVRRERMGHISLAVPVVHTWFFRSVPSK
IGALLDLSTKELERIIYYEVYVVINPGEPGEKQGIKKLDRLTEEQYFQIITEYEDNQDLD
DHDPNKFVAKMGGEAIHMLLKNIDLDETAVHLRTVLRESNSEQKRTDALKRLKVVESFRK
SYEPHKKSRKKPNALFAEDDMPEPYVYEGNKPEYMVMEVIPVIPPELRPLVPLEGGRFAT
SDLNDLYRRVIIRNNRLKKLIDIRAPEVILRNEKRMLQEAVDALFDNSRKANAVKTGESN
RPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHECGLPKSMAIELFQPFV
IRRLVDRGIAKSVKSAKKLIDRKDPVVWDVLEKVIDGRPVMLNRAPTLHRLGIQAFQPHL
VEGKAIQIHPLVCTAFNADFDGDQMAVHIPLSQEAQLEASLLMLSAHNLILPQSGKPVTV
PSQDMVLGMYYLTKSRGGEMGEGRIFYSAEEVRIAYNEQLVGLHAQIFMRYDGQVDQKFD
AIRVMETFVEPTSEKAAWLRKQLDEKRMVLTTVGRVIFNQHVPESIGFINRVIDKKVAKE
LIGRLSSEVGNVETAKFLDNIKEVGFHYAMKGGLSVGLSDAIVPETKAKHIKNAQRDSTK
VVKEYNRGTLTDNERYNQIVDVWQKTSNIVAEESYQKLKRDREGFNPLYMMLDSGARGSR
EQVRQLTGMRGLIARPQKSMSGQPGEIIENPIISNLKEGLTVLEYFISTHGARKGLSDTS
LKTADAGYLTRRLHDVAQDVIVTIDDCGTTRGLYVHRNIEEETSGQIKFREKIKGRVAAR
DIVDTVTGNVLVQAGEIITEELADSIQETAGVEEAEIRSVLTCESKVGICSKCYGTNLSV
HQLVEIGEAVGVIAAQSIGEPGTQLTLRTFHQGGAAQGGISETETKAFCDGQVQFEDVKT
VAHTAMNEDGMEDVRTIVIQKNGKINIIDSESGKLLKRYMLPHGAHLACEDGVLVKKDQV
LFRSEPNSTQIIAELPGTIKFADIEKGVTYKEEVDPQTGFSQHTIINWRTKLRATETREP
RLLILDENGEVRKTYPVPIKSNLYVEDGQKVLPGDILAKVPRNLDRVGGDITAGLPKVTE
LFEARIPTDPAIVSEIDGYVSFGAQRRSSKEIKVKNDFGEEKVYYVQVGKHVLANEGDEV
KAGDPLTDGAVSPQDILRIQGPNAVQQYLVNEIQKVYQINAGVEINDKHLEVIVRQMLQK
VRIEEPGDTDLLPGDLIDRSAFIEANRAISEKVRISERGDAPARIQENQLHKLRDITKLN
RELRKNSKKMVAYEPALQATSHPVLLGITSAALQTESVISAASFQETTKVLTDAAVAGKV
DYLVGLKENVIVGKLIPAGTGLKKYKTIKLVGEESAPAPVVVEAVVSHEAEASPMVEEEV
AE
NT seq
4509 nt
NT seq
+upstream
nt +downstream
nt
atgattttgtcacaaggaacatcgcctcttaaaggtgatttttcacgtataaagtttagt
attgcttcgcccgagagcattcttgcgcactcgcgtggtgaggtgttaaagcccgagact
attaattatcgcacttttaagcctgagcgtgatggcttgatgtgtgagaaaatttttggt
cctaccaaagattgggagtgctattgtggtaagtataagcgcgtgcgctataaaggtatt
atttgcgaccgttgcggtgttgaagtaaccactaaaagcgttcgccgtgagcgcatgggt
catatttcgcttgcggtgccagttgtacatacatggtttttccgttcagtgccaagcaaa
attggtgcgttgcttgatctttcaaccaaagagcttgagcgcattatttattatgaggtc
tatgttgttattaaccctggtgagccgggtgaaaagcaaggcattaaaaagcttgatcgc
ttaacggaggagcaatatttccagattattactgagtatgaggataatcaggatttggat
gatcacgatcctaataagtttgtagcaaaaatgggtggtgaagccattcatatgttgctt
aaaaatattgacctcgatgaaacggctgtgcatttgcgcacggtgcttcgcgaaagcaat
tctgagcaaaagcgtacggatgccttaaagcgcttgaaagtggttgagtcattccgtaaa
agctatgagccgcacaaaaaaagtcgcaaaaagccgaatgcgctttttgctgaagatgat
atgccagaaccatatgtttatgagggcaataagcctgagtatatggtgatggaagttatt
cctgttattccacctgaacttcgtccgttggtgccgcttgaaggtggacgttttgcaacc
tccgatttgaatgatctctatcgtcgggtgattattcgcaacaatcgcttgaagaagctg
attgatattcgtgctcctgaggttattctccgtaacgaaaagcgcatgttgcaagaagcg
gtagatgcgttgtttgataattcgcgcaaagcgaatgcggtgaaaacaggggagtcaaac
cgtccattaaaatcactttccgatgcactaaaaggcaagcaaggtcgttttcgtcaaaac
ttgcttggtaagcgcgttgattactctggtcgttcggttattgttgtgggacctgagctg
aagttgcatgagtgcggtttgccaaaaagtatggcaattgagctgttccagccatttgtt
attcgtcgcttggtggatcgtggtattgcaaaatcggtaaagtcggcaaagaaactgatt
gaccgcaaagatcctgtggtgtgggatgtgcttgaaaaggttattgatgggcgtcctgta
atgcttaaccgtgcaccaacgttgcaccgtcttggtattcaagcctttcagccgcattta
gttgaaggcaaggcgattcaaattcaccccttagtttgtacagcatttaatgctgacttt
gatggcgaccaaatggctgtgcacattccgctttcgcaagaagcgcagcttgaagcctcg
cttttaatgctttcagcccataacctgattttaccgcagtcgggtaaaccagtaactgtg
ccatcgcaagacatggtgctcggtatgtactaccttaccaaatcgcgtggtggcgaaatg
ggtgaagggaggattttctatagtgccgaagaggtgcgtattgcctataacgagcaattg
gttggcttacatgcgcaaatttttatgcgttacgatggtcaagttgatcaaaagttcgat
gccattcgcgttatggaaacttttgttgagccaacttccgaaaaagcagcatggcttcgc
aagcagcttgacgaaaagcgtatggtgcttacaacggttgggcgcgttatttttaaccag
catgtgcctgagagtattggctttatcaatcgtgtgattgataaaaaagtggctaaagag
ttaattggtcgtttaagcagtgaggtgggtaacgttgaaactgccaagttccttgataac
attaaggaagtaggttttcattatgcgatgaaaggcggactttcagttggtctttctgat
gctattgtgcctgaaacaaaagcgaagcacattaaaaatgctcagcgcgatagtactaag
gttgtgaaagagtataaccgtggcactttaaccgataacgaacgttacaatcaaattgtt
gatgtttggcagaaaacctccaacattgtagctgaagagtcgtaccaaaaactcaagcgt
gatcgcgaaggatttaatccgctctatatgatgcttgattctggtgctcgtggttctcgt
gagcaggtgcgccagcttaccggtatgagaggtcttattgcacgtcctcaaaaatctatg
tcgggtcagccgggtgaaattattgaaaacccgattatctcgaacctgaaagaggggtta
acggtgcttgagtactttatttcaacgcacggtgctcgtaaaggtctttcagatacatcg
ttgaaaacggctgacgcaggataccttactcgtaggttgcacgatgtggcgcaagatgtg
attgtaaccattgatgattgtggtacaacgcgtggtctttatgttcatcgtaatattgaa
gaggagactagtggtcaaattaagttccgcgaaaaaattaaagggcgtgttgccgctcgt
gatattgttgataccgtaaccggcaatgtgttagtgcaagcgggtgaaattattactgaa
gagcttgctgacagcattcaagaaactgctggagttgaagaggctgaaattcgttcggtg
cttacgtgcgaatccaaagttggcatttgttccaagtgctatggtaccaacttgtcggtt
caccagcttgttgaaattggtgaagcggtaggtgttattgcggcacaatccattggtgag
cctggcacgcagcttactttgcgtaccttccaccaaggtggtgcggcgcaaggtggtatt
tcggaaacggaaaccaaagctttctgtgacggtcaagtgcagtttgaggatgtaaaaacc
gttgcgcatacggctatgaatgaagatggtatggaagatgttcgtaccattgtgattcag
aaaaatggtaaaatcaacattattgattctgaatcaggtaagttgctgaagcgttacatg
ctgccgcatggcgctcatcttgcttgtgaggatggggtgcttgtgaagaaagatcaagta
ctctttagaagtgagccaaacagcacgcaaattattgcggagctgcctggtaccattaag
tttgctgatattgaaaaaggcgttacctataaagaagaggttgatccgcaaacaggcttt
tcgcagcacaccattattaactggcgtacaaagcttcgtgcgactgaaacgcgtgagcct
cgtttgttaattcttgatgaaaatggggaagtgcgtaaaacctatcccgtgccaattaag
tcgaacctttatgtagaggatgggcaaaaggtgcttccgggcgatattcttgctaaggta
ccacgtaacctcgatcgtgttggtggcgatattacggctggtttgccaaaagttaccgag
ctgtttgaagcccgtattccaaccgatcctgctattgtgtcggaaattgatggctatgtt
agctttggtgcccagcgccgtagcagtaaagagattaaggtgaagaatgactttggtgaa
gagaaagtctattacgtacaggttggtaagcatgtgcttgccaatgaaggcgatgaggta
aaagcaggcgatccgttaaccgacggtgctgtttcgccacaagatattctccgtattcaa
ggtccaaatgccgtacagcagtatctggtaaatgaaattcaaaaggtttatcagattaat
gcaggtgtggaaattaacgataagcaccttgaagtgattgtacgccaaatgcttcaaaaa
gtacgtattgaagagcctggtgataccgatttgctgcctggcgacttaattgatcgtagt
gcgtttattgaagcaaaccgtgccatttctgaaaaagtgcgcataagtgagcgtggtgat
gcgcctgcacgtattcaggaaaatcaattgcataagcttcgcgatattaccaagctgaac
cgcgagttgcgtaaaaatagcaaaaaaatggtggcttatgagcctgcgttgcaagctaca
tcgcatcctgtacttcttggtattacgagtgcggcattgcaaacggaaagcgttatttca
gccgcatccttccaagaaaccaccaaagtgcttaccgatgctgcggttgcaggtaaggtt
gattaccttgttggtttaaaagagaatgtgattgttggtaagcttattcctgctggtacg
ggtttaaagaaatacaagaccattaagttggttggtgaagaatcagcaccagcacccgtt
gttgttgaagcggtggtaagccatgaggcagaagcttcgcctatggttgaagaggaggtt
gctgagtag
DBGET
integrated database retrieval system
