Chlorobium chlorochromatii: Cag_1689
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Entry
Cag_1689 CDS
T00290
Name
(GenBank) RNA binding S1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cch
Chlorobium chlorochromatii
Pathway
cch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cag_1689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cch03019
]
Cag_1689
03016 Transfer RNA biogenesis [BR:
cch03016
]
Cag_1689
Enzymes [BR:
cch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Cag_1689
Messenger RNA biogenesis [BR:
cch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Cag_1689
Transfer RNA biogenesis [BR:
cch03016
]
Prokaryotic type
tRNA degradation factors
Cag_1689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
KH_1
RNase_PH_C
S1
PNPase
RNase_II_C_S1
KH_2
KH-I_KHDC4-BBP
OB_RRP5_4th
S1_RRP5
KH_PNO1_2nd
KH_KhpA-B
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
ABB28941
UniProt:
Q3APY4
LinkDB
All DBs
Position
complement(2192915..2195101)
Genome browser
AA seq
728 aa
AA seq
DB search
MFVQKSIDLGHGRILSIETGKMAKQADGAAIVRLGDTMVLATVVSSKKTPPLGQDFFPLQ
VEYREKYSAAGRFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYYETQIIISVISS
DQVNDGDVLGGLAASAAIMVSDIPFQNPMSEVRVGRVNGLYIINPDVNELKESDIDMCIG
GTNDTICMLEGEMNEISETEMLEAIQFGHTAIRKLCVLQQEVAAEVAKPKRLFVPTVIPT
ELDSFVRANCQSRLRELAYTPLGKEERAERTAAIYNETLAATLEHFRATISSEEAQADTA
KALCLNEHIIEDQIHAVEKEVMRHMILDDAKRLDGRALDQVRPITIELGLIPRAHGSALF
TRGETQALVTLTLGTQKDAQSVDNLTNSDDKRFYLHYNFPPFSVGECGRLGSIGRREIGH
GNLAERSIKMVAPTEAEFPYTIRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKPVSG
IAMGLIKENDKYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHIVENAL
EQARKGRLHILNEMEKAIPASRTDLATYAPRLTTIKIPSDCIGMVIGKGGETIRGITEET
GAEINIADDGTVTIACTTKEGTDAALATIKSLTAKPEVGNIYVGKVRDVRDELGAFVEFL
PKTDGLVHISEISSTRVAKVSDHLKVGDKVTVKLVDVRKDPRTGKTKFALSIKALEQPKQ
EGGEATQN
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcaaaaatcaattgatcttggtcacggcaggattctttctatcgaaacgggc
aaaatggcaaagcaagccgatggtgctgctattgtgcgtcttggcgatactatggtgctt
gccacagtggtttcaagcaaaaaaactcctccattaggtcaagatttttttccgttacag
gttgagtatcgtgaaaaatattccgctgctggtcgctttcccggaggcttttttaagcgc
gaaggtcgtccttctgaaaaagaaattctttctgcccgcttaattgaccgtgcccttcgt
cctctctttcctgacggctattactacgaaacccaaattattatttcagttatatcatcc
gatcaagtaaatgatggtgatgtgctgggtggtctagctgcctctgctgccattatggtt
tccgatattcctttccaaaaccctatgtcggaagtgcgtgttgggcgtgttaatggcttg
tacattatcaaccccgatgttaacgaactaaaagagagcgatattgatatgtgcattggt
ggtaccaacgataccatttgtatgcttgagggtgaaatgaatgaaatttcggaaactgaa
atgcttgaggctattcagtttgggcacactgccattcgcaagttatgtgtgttgcaacaa
gaggttgccgctgaagttgctaagccaaagcgcctctttgttccaaccgttattccaact
gagcttgatagctttgtgcgtgccaattgccaaagccgtttacgcgagttggcttacacg
ccgcttggcaaagaggagcgtgctgagcgcacggctgcaatttataacgaaaccttagcg
gctacgttagagcattttcgtgctaccattagcagcgaagaggcacaagctgatactgca
aaagcgctctgcttaaatgagcatattattgaagatcaaattcatgcagttgaaaaagag
gtgatgcgccacatgattcttgatgatgcaaagcgtcttgatggacgtgcgcttgatcaa
gttcgccccattaccattgagcttgggcttattcctcgtgctcacggctcggcactcttt
acgcgtggtgaaacgcaagcgctggtaactctaacgcttggcacccaaaaagatgcgcaa
tcggttgataacctcactaatagtgatgacaagcgcttttaccttcactacaattttccc
ccatttagcgttggcgaatgtggacgtcttggcagcattggtcgccgcgaaattgggcat
ggcaatcttgcagagcgttctattaaaatggttgcccctactgaagccgaattcccttac
actatccgcattgtttccgacattcttgaatcaaacggttcatcttcaatggcatcggtg
tgtggaggaactttagcgttgatggatggcggcgttcccattagaaagccggtgtcgggt
attgcaatgggattgattaaagagaatgataagtatgcggtgctctccgacattttaggc
aacgaggatcaccttggcgacatggattttaaagtttccggtacgcgtgatggcattact
gcctgccaaatggatattaaaattgatgggcttgattaccacattgtggaaaatgctctt
gagcaagctcgcaaagggcgcctccatattcttaatgaaatggaaaaagccattccagca
tcacgtaccgatttagcaacttatgcaccacgtttaaccaccattaaaattccttccgat
tgcattggcatggtgattggtaaaggtggcgaaaccattcgtggcattaccgaagagacg
ggtgctgaaattaatattgccgatgatggcaccgtaaccattgcgtgtacgaccaaagag
ggcaccgatgcagccttagctaccatcaaaagcctgactgcaaaacctgaggttggcaac
atttacgttggcaaagtgcgcgacgtgcgcgatgaacttggtgcctttgtagagttcctg
ccaaaaaccgatggcttggtacacatttcggaaatttcgtcaactcgtgtggctaaagta
agcgatcacttaaaggtaggcgataaagttaccgtcaaattagttgatgttcgcaaagac
ccacgcaccggtaaaacgaagttcgccctttcaattaaagcgcttgagcagccaaaacaa
gagggtggcgaagcaacgcaaaactaa
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