Chlorobium chlorochromatii: Cag_1882
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Entry
Cag_1882 CDS
T00290
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cch
Chlorobium chlorochromatii
Pathway
cch03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cag_1882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cch03400
]
Cag_1882
Enzymes [BR:
cch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cag_1882
DNA repair and recombination proteins [BR:
cch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cag_1882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
RecG_dom3_C
Glyco_tran_WecG
AAA_16
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ABB29132
UniProt:
Q3APE3
LinkDB
All DBs
Position
complement(2390726..2394025)
Genome browser
AA seq
1099 aa
AA seq
DB search
MKTQLASEESSVAVVRHNPSWLFDILRQSAPYNQLTSLLSKSNAQQKGDILLPLAGLYGS
FSSLLAATLFADATAPLMVVCSSNSFERYENDLEVLLPKGSLCNSADELSHTIEALATKR
RSLLLSLFDDLDVPLCSPSEVESRMFHVTLDATIGYDALKHFLTANGFEQRDFVEDEGEF
SLRGSIIDVYPFGAAEPLRIELFGDTITSLRLFDSNSQLSGKNLQQATLTANFTTPNSPI
TLLDYLAPETVVLVDDVAELIAQSDGKELLERLCYFRCLSINHAEVQALNFGGEAQQKLQ
GNFRTLATLLHTAHHEARQPLFAMSSKREIGELNDFLAQESSQEALPQSGWLPVTLHSGF
RFGSLDLYTESDIFGKMHTHKVHRKRKVRGISLKELQKLKVGDYVVHEDYGIGIFKSLET
ITAGNSEQESVLIEYANGDQLFVNVQNIHLLSKYTASENSSPTLSKLGSSKWAAKKEKVR
KKIRDIAINLIKVYAQRKMQPGFAFAPDSIFMREFEAAFIFDETPDQLRAINDVKKDMQA
SHPMDRLICGDAGFGKTEIAMRSAFKAVESKKQAAVLTPTTILAHQHADSFTRRFANFPI
SIAVLSRFVSRKEQLSLLKKIEEGKIDIVIGTHRLVSKDVHFKDLGLLVIDEEQHFGVEV
KEKLREQFPTIDTLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPVETIITDFDAALI
QSAIQRELQREGQVFFLHNRIAGLETIAESLRELVPSARIVYAHGQMPTRELEKIMMDFM
QQEVDVLISTTIIGSGLDISNANTIIINRADLFGLSDLYQLRGRVGRSERKAYCYLITPP
MKTLKKDALQRLAVIESFTELGSGFNIALRDLDIRGAGNLLGAEQSGYIHELGFDLYQKM
LEETVAELKTNEFSHMFEEEGNKPLRQQKPCDLLFFFDALIPDYYVAATQERFAFYNRIA
KATRNEQLDAIASELCDRFGKLPEEVTNLLMITKLKLIGTLLGLEKIDIQPQSTMLYLPD
QASEHVAQRHYLQYLFTAVQAEWMAEYKPGFKMEKKMKLQLHHPTHADTTSAGLMERYSA
LLHKVYEEAKSEVEAAMVG
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgcaactcgcttctgaagagtcgagcgtagccgtggttcgccataacccatcg
tggctcttcgacatacttcgccaatctgccccatacaatcagctcacctcactcctttcc
aagagtaatgctcagcaaaagggtgatatacttttgccacttgcgggtttgtatggctct
ttttcatcattacttgcagccacgctgtttgcggatgctacggctccgttaatggtggtg
tgtagctcaaatagctttgagcgttatgaaaatgaccttgaagtattgctgcccaagggg
agtttatgcaatagtgctgatgagctttcgcacactattgaagcgcttgctacaaaacgg
cgttcgctgcttctttcgctgtttgatgatcttgacgtgccgctttgctcgccgagtgag
gttgaaagtcgcatgttccatgtaacgctggatgccaccattggttacgatgctctcaag
cattttttaacggcaaatggttttgaacagcgcgattttgttgaggatgaaggagaattt
tctctgcgcggctccattattgatgtttatccctttggtgcggcagaaccgttgcgtatt
gaattatttggcgacaccattacttcgcttcgcttgtttgatagcaatagccagctttca
ggcaaaaacttacagcaagcaacgctgacggcaaattttaccacacccaactcaccgatt
acgctgctcgactatctcgcccccgaaacagtggtgttggtagatgatgttgctgaactg
attgcgcaaagtgatggcaaggagctgctggaacggctttgctatttccgttgcttgagc
atcaatcatgcagaagttcaagcgttgaactttggaggtgaagcgcaacaaaagctgcaa
gggaattttcgcactttagccaccctgttgcacacggcgcaccacgaggcacgtcagcca
ctgtttgccatgagctctaagcgcgaaattggcgagttaaacgactttcttgcccaagag
agtagccaagaagccttgcctcaaagtggatggcttcctgtaacgttgcatagtggtttc
cgttttggctcgctcgacctttataccgagtcggatatatttggcaaaatgcacacgcac
aaagtgcaccgtaaacgcaaagtacgcggcatttctttaaaagagctgcaaaagctgaaa
gtgggcgattatgtggtgcatgaggattacggcattggcatttttaaatcgcttgaaacc
ataacggcaggcaattcagagcaagagtcggtgctcattgagtacgcaaatggcgatcag
ctttttgtcaacgtgcagaacatccatctgctctccaaatacaccgcttccgaaaattcc
tcccccaccctatcaaagcttggcagtagcaaatgggcagccaaaaaagagaaggtgcgc
aaaaaaattcgcgacattgccattaacctcattaaggtgtatgcgcagcgaaaaatgcag
cccggctttgcctttgcacccgattccatttttatgagggaatttgaagctgcctttatt
tttgatgaaacacccgatcagcttcgggctattaacgatgttaaaaaggatatgcaagcc
tcccatcctatggataggcttatttgtggcgatgcaggttttggtaaaaccgaaattgcc
atgcgctcggcatttaaagcggtggaatccaaaaagcaagctgcggtgcttacgccaact
accattcttgcccatcaacatgccgattcctttacgcgccgctttgccaattttcccatc
tccattgccgtactgagccgctttgtaagccgcaaagaacagctctccctgcttaaaaaa
attgaggagggaaaaattgatattgtgattggaacgcaccgcttggtttcaaaagatgtc
cattttaaagaccttggtttattggttattgatgaagagcaacattttggcgttgaggta
aaggaaaaactgcgagagcaattcccaaccattgacacgcttaccatgtcggcaacgccc
attccgcgcacgttgcaattctccatgcttggcgcacgcgacctctccattgtttccacc
cccccgaaaaatcgccaaccagtagaaactattattaccgattttgatgcagcgcttatt
caatcggcaattcagcgagaacttcagcgcgaggggcaggttttttttctacacaaccgt
attgcagggcttgaaactattgccgaaagcttacgtgaacttgtgccttcggcacgcata
gtttatgcgcatgggcaaatgccaacacgcgagttggaaaaaattatgatggattttatg
cagcaagaggttgatgtcttgatttcaaccaccattattggctcagggcttgatatttca
aacgctaacaccatcattattaatcgcgctgatctttttgggctctctgacctttaccaa
ttgcggggacgtgttgggcgtagtgaacgcaaagcctactgctacctcattacgccaccc
atgaaaacgctgaaaaaagatgcgttgcagcgccttgccgttattgaaagctttaccgag
cttggctcaggctttaacattgcactgcgtgatcttgatattcgtggagcaggtaatttg
cttggagcggagcaatcaggctacattcacgagcttggcttcgatttatatcaaaaaatg
ttggaagaaaccgttgcagagcttaaaaccaacgagtttagccacatgtttgaggaggag
gggaacaagccactacgtcagcaaaagccctgcgacttgctcttcttttttgatgcgctt
atccctgactactatgtggctgccacgcaagagcgctttgctttttataaccgcatagca
aaagctacgcgcaacgagcagcttgatgccattgcaagcgagctttgcgaccgttttggc
aaactacctgaagaggttaccaatttgttgatgatcacaaaactcaagcttattggcaca
ttgctggggttagagaaaattgacattcagccacaaagcaccatgctctacctgcccgat
caagcaagcgaacacgttgcccaacgccactatttgcaatacctctttacggcagtgcaa
gcggagtggatggcagagtacaaaccgggctttaagatggagaaaaaaatgaagctccag
ctccaccatcccacacatgctgacacaacatctgctggattaatggagcgctatagtgcg
ttattgcacaaagtgtatgaggaggcaaaaagtgaggtggaagctgcaatggtggggtaa
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