Caldicellulosiruptor changbaiensis: ELD05_05830
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Entry
ELD05_05830 CDS
T05905
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ccha
Caldicellulosiruptor changbaiensis
Pathway
ccha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ELD05_05830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccha03019
]
ELD05_05830
03016 Transfer RNA biogenesis [BR:
ccha03016
]
ELD05_05830
Enzymes [BR:
ccha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ELD05_05830
Messenger RNA biogenesis [BR:
ccha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ELD05_05830
Transfer RNA biogenesis [BR:
ccha03016
]
Prokaryotic type
tRNA degradation factors
ELD05_05830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
T6PP_C
OB_RRP5_4th
GcvP2_C
SPATA25
RIP_P131-like
Motif
Other DBs
NCBI-ProteinID:
AZT90194
UniProt:
A0A3T0D585
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All DBs
Position
1201154..1203259
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AA seq
701 aa
AA seq
DB search
MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTV
DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD
PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSG
TKDKVMMIEAGAQEISEDIMLEAIMTAQEEIKKIVEFIEGIVKEVGKPKMQYEKRVVPEE
IKQKVRELAYEKAYQYVQIPDKIERDKKLDELKEEVLKVFEGETEDTLLLVDDALYNLEK
EIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEM
QFLDGLEEEEAKRYMHHYNFPPYSTGESKPVRGPGRREIGHGALAERALEPVIPSEDEFP
YTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKEDGSFITLTDI
QGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMQTVI
DKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFVAAPD
DMSGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDNKKLKS
VDEVVKVGDLVLVKVIGIDRLGRIALSRKEALNVTYSRKAK
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
ttggaaagtaaaatttataaaatggagcttgcaggaagggagctgagttttgagattggt
aaatatgcacttttggcgaatggagcagtgcttgcaagatacggtgacacagctgtttta
gtaactgcttgtgcttcagaaaaaccgagagagggtataaactttttcccattgacagtt
gactatgaagaaagactatattctgtgggaaagattccaggtgggtttatcaaaagagaa
ggaaaaccttctgaaaaagcaattctgtctgcaagattaattgacaggccaatacgtcct
cttttcccgaaagacttttatcatgatgtatctgtcatcgcaacagttttgtcagttgat
cctgacaatccacctgatgttttggcaatgcttggctcatcagttgctctatcaatatct
gatattccatttgaaggtccaacaggctctgtgttggttgggtatgtggatggaaagatt
gtaatcaatcctacagcaaaggaaagagaagtcagtaagctacaccttgttgtatctggc
acaaaagataaagtaatgatgattgaggcaggtgcccaggagatttcagaagacataatg
cttgaggctattatgacagctcaagaggagattaaaaagattgttgagtttatagaggga
atagtaaaagaagttggaaagccaaagatgcaatatgaaaaaagagtagttcctgaagag
ataaagcaaaaggtaagagaacttgcatatgaaaaagcatatcagtatgttcagatacca
gataagatagaaagagataaaaaacttgatgaactgaaagaagaggttttgaaggtattt
gagggcgagacagaagacacactccttttggttgacgatgcgctttacaaccttgaaaaa
gagattgttcgaaagatgattgctgaagagggtaagagaccagacggacgcaaatttgat
gaaatcagacctctatatgctgaggtaggaattttaccgaggactcacggctcagccctg
ttcaaaagaggttatactcaggttctgacagttgcaacacttggaacaaaaggtgagatg
caatttttagatgggcttgaagaagaagaggcaaaaaggtatatgcatcactacaacttt
ccaccgtattcaacaggggagtcaaaacctgtaagaggacctggtagaagagagatagga
catggtgctttagcagagagggctcttgagcctgttataccttcagaagatgagttcccg
tatacaataagacttgtatcagaagttttaacatcaaacggttcaacttcacaagcaagt
gtatgtggaagcactcttgcactaatggatgctggtgttcctataaaagcacctgttgca
ggaatatcaattggtcttattacaaaagaagatggaagctttatcacacttactgacatt
caaggaatagaggatttctttggtgatatggattttaaagtggctgggactcgtgaaggt
ataactgcaatccaacttgatataaaaatccatggtttgacaaaagagataattgaaaag
gcgttatatcaagcaagagaagcaagactaaagattttagactttatgcaaacagttatt
gacaaaccgcgaagtgagctttcaccatatgcgcccaagatatttaaaactacagttgac
ccagaaaagattcgcgatattattggtcctggtggtaagatgattaataaaatcattgca
gagacaaatgtgaaaatcgatatagagccagatggtagaatatttgttgcagcacctgat
gatatgtcaggtaacagagcgattagtatgatagaaggtataggtcgtgaaattgaagta
ggccagttcttcttgggtaaagttacaagaacagcttcatatggggcgtttgttgagata
tatcctggtaaagaagggcttgtccatatttctcagcttgacaacaagaaacttaaatcg
gttgatgaggttgtcaaagtaggagaccttgtattagtaaaggttattggaattgacaga
cttggccgaattgcactttctcgaaaggaagctttaaatgtcacatattcgcgaaaagca
aaataa
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