| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
ccha Caldicellulosiruptor changbaiensis
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:ccha00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ELD05_10135 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:ccha03021]
ELD05_10135 (rpoC)
03400 DNA repair and recombination proteins [BR:ccha03400]
ELD05_10135 (rpoC)
Enzymes [BR:ccha01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ELD05_10135 (rpoC)
Transcription machinery [BR:ccha03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ELD05_10135 (rpoC)
DNA repair and recombination proteins [BR:ccha03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ELD05_10135 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(2071938..2075429)
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| AA seq |
1163 aa
MDLFNFDAIKISLASPEKIREWSRGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECH
CGKYKKVKYKGVVCDKCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGVPSRMGLILDMT
PRNLEKVLYFAAYVVIDPGDVPNLEKKQILSEKEYRELKEKYGDRFKAGMGAEAIKELLK
EIDLDKLSQELRQELETATGQKKLKIIKRLEVVEAFRKSGNRPEWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLMELGAPDIIIRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQCGLPKE
MALELFKPFVMKKLVEKGICNNIKNAKKAVERQRSEVWDILEEVIKDHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARFLMLSANNLL
KPADGKPIVVPTQDMVLGIYYLTLEKKGDKGEGMIFSSEDEALLAYEHKVVGLHARIKVR
RTIEKDGEVISGIVETTPGKIILNQVIPQDLGFVDRSKKENLLKYEIDTLVDKKMLGKII
DRCIKVYGTTRTAEILDEIKELGFRFSTRGAITISVSDMVIPEVKQKLIAEAEQKVENIE
KLYRHGLISDEERYEQVISIWNETKDKLTEELIQNLDEFNPIFMMANSGARGSKNQISQL
AGMRGLMANPSGKTIEMPIKSNFREGLNVIEFFISTHGARKGLADTALRTADSGYLTRRL
VDVAQDIIVREEDCGTEKGIEVSEIRDGTEVIETLEERIIGRYAAKDIINEKTGEVIVKR
NELITEEIAKRIVDAGEKSVYVRSVLECKTRYGVCTKCYGLDLGTGQPVNVGEAVGIIAA
QAIGEPGTQLTMRTFHTGGIAGQDITQGLPRVEELFEARKPKGVAIISEIEGYVSIKEDK
KRTITVRNDNGEERTYEVPYGARLKVNDGDYVKAGDELTEGSINPHDLLRIKGPRGVQSY
LLAEVQKVYKMQGVDINDKHIEIIIRQMMKKVKIEDPGDTELLPGDIVEIYRFEEENDRA
IAEGKRPALGRRVLLGITKAALSTESFLSAASFQETTRVLTDAAIKGKVDPLIGLKENVI
IGKLIPAGTGMAKYRNIIVEEKA |
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| NT seq |
3492 nt +upstreamnt +downstreamnt
atggatttgttcaattttgatgccataaagattagtcttgcttctcctgaaaagattaga
gagtggtcacgaggcgaggtcaaaaaacctgaaactataaactatagaacattaaagcca
gaaaaggatggacttttttgtgaaaaaatctttggtccgacaaaagactgggagtgccat
tgtggaaaatacaaaaaggtaaaatacaaaggtgttgtttgtgacaaatgcggtgttgag
gtgacaaaatcaaaggtaagacgtgagagaatggggcacattgagcttgctgcccctgtc
tctcacatctggtatttcaaaggtgttccaagccgtatgggtcttatacttgatatgacc
ccaagaaacttggaaaaggttttatactttgcggcatatgttgtcattgaccccggcgat
gtaccaaacttagagaaaaaacaaatactatccgaaaaggaatacagggagctaaaagaa
aagtatggcgacagattcaaggctggaatgggagcagaggctataaaagagcttttgaaa
gagatagatttagacaagctttctcaagagctacgacaagagcttgagacagcaacaggt
caaaagaagctaaagatcataaagaggcttgaggttgtcgaagcgtttagaaagtctgga
aacaggcctgagtggatgatattagatgtaataccagttattccacctgagcttcgtcca
atggtccagcttgatggagggagatttgcaacatctgatttgaatgatttgtacagaaga
gttataaataggaacaaccgtttgaaaaagttaatggagttaggcgcacctgacataatt
atcagaaacgaaaagagaatgttacaggaagctgttgatgcgcttattgacaatggtagg
cgtggaagacctgtaacaggtcctggaaacaggcctttgaagtcactttctgacatgcta
aaagggaaacaagggaggttcagacagaatcttttaggaaaacgtgttgactattcaggt
cgttctgttatagttgttggacctgagctaaagatttatcagtgcggtcttccaaaagaa
atggcacttgagcttttcaagccattcgtaatgaaaaaacttgttgaaaagggaatatgt
aacaatataaaaaatgctaaaaaagcagtcgaaagacaaagaagtgaggtatgggacata
ttagaagaggtcataaaagaccatccagttttgttaaacagagctccaaccttgcacaga
cttggaattcaggcatttgaaccagttcttgttgaaggaagagctataaggcttcatcct
cttgtatgtacagcatacaatgcagactttgacggtgaccagatggcagtacatgttcca
ctttctgcagaggcacaggctgaggcaaggtttttgatgctctctgcgaacaatttactt
aaacctgctgatggaaagcctattgtagttccaacgcaggatatggttttgggaatctat
tatctgacgcttgagaaaaaaggagataagggagagggaatgatattctcctcagaggat
gaggcgctacttgcatatgaacacaaagtagttggacttcatgcaagaattaaggtgaga
aggacaattgaaaaagatggagaagtgatttcaggtattgttgagacaacgccgggtaag
attatactaaatcaggtaataccacaggatttaggttttgttgataggagcaaaaaagag
aacttgctaaagtatgagatagacactcttgttgacaagaagatgctgggtaaaattatt
gatagatgtatcaaggtgtatgggacgacaaggacagcagagatattagatgagataaaa
gaacttggatttagattttccacaagaggagcaattacaatctcagtttcggatatggta
attccagaggtcaagcaaaaactcatagcagaggcagaacaaaaggttgagaatattgaa
aagctatacagacatggtttgatttcagatgaagaaagatatgaacaggtaatttctatt
tggaatgagacaaaagacaagctcacagaagaacttatccaaaatctcgatgagtttaac
ccaatattcatgatggcaaactcaggtgcacgaggttccaagaaccagataagccagctt
gcaggtatgcgtggacttatggcaaacccgtctggaaaaacaatagagatgcctataaag
tcaaactttagagaaggcttaaatgtaatagagttctttatctctacgcacggtgcgaga
aaaggcttagcagacacagcactgagaactgcagactcgggttacttgacaagaaggctt
gttgatgttgctcaggatataattgttcgggaagaggattgtggaacagaaaagggtatc
gaggttagtgagataagagatggaacagaagtaatagagacacttgaagaaaggatcata
ggaaggtatgctgcaaaggatattataaatgaaaaaacaggtgaggtaatagtcaagaga
aatgaacttatcacagaagagattgcaaaaagaattgtagatgctggcgaaaagagtgtt
tatgtaaggtcagtgcttgagtgcaagacacggtatggagtttgtacaaaatgttatgga
cttgaccttggtacaggtcagccagtaaacgtaggtgaagcagtgggaataattgctgca
caggcaataggtgagcctggaacacagcttacaatgagaacattccacacaggtggtatt
gcaggacaggacatcacacaaggtttgccaagggttgaagaactatttgaggcaagaaaa
cctaagggcgttgcaataatttctgagatagaagggtatgtctctatcaaggaggacaag
aagaggacaatcactgttcgaaatgacaatggtgaggagaggacgtacgaagtaccttac
ggggcgcgattaaaagtaaatgatggagactatgtcaaagcaggggatgagctaacagaa
ggttcgatcaatccgcatgatcttttgaggataaaaggtccaagaggtgttcaaagctac
cttttggctgaggttcagaaggtttacaaaatgcagggtgttgatataaacgacaagcat
atagagataataatcaggcagatgatgaagaaggtcaagatagaagatccaggagataca
gaacttttgccaggcgacattgtagagatatacaggtttgaagaagaaaacgacagagcg
atagcagaaggcaaacgtcctgcgcttggaagaagggtacttcttggtataacaaaagca
gcactttctacagagtcgttcttgtcggctgcgtctttccaagagactacaagagttctg
acagatgcagcaattaaaggtaaggttgacccactgattggtcttaaagagaatgtcatt
ataggtaagcttattccagctgggacaggtatggcaaagtatagaaatattatagttgaa
gaaaaagcataa |
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