Caldicellulosiruptor changbaiensis: ELD05_10505
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Entry
ELD05_10505 CDS
T05905
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ccha
Caldicellulosiruptor changbaiensis
Pathway
ccha02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ccha00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ELD05_10505 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccha03021
]
ELD05_10505 (rpoD)
Transcription machinery [BR:
ccha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ELD05_10505 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
DUF4423
IF2_N
Motif
Other DBs
NCBI-ProteinID:
AZT91688
UniProt:
A0A3T0D9L6
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Position
complement(2149483..2150613)
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AA seq
376 aa
AA seq
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MQQKEEAVKSSPKKNSDDKNKTEEKKNLIREKVRELISLGQSKGFLTYSEIQEILDKVEL
DASQVENIYDTLESMGIDVVDDRVSEEELLKDDLENLPEGIAIDDPVRMYLKEIGKIPLL
TPEEEIELAKRIEQGDEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAV
EKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGR
EPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAA
YSMLKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALR
KLRHPSRSKKLKDFLE
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
attcagcaaaaagaagaagctgtaaagtcttctcctaagaaaaattctgatgataaaaat
aaaacagaagaaaagaaaaatctcatcagagaaaaggttcgcgagcttatttcgcttggt
cagagcaaaggatttttgacatattctgaaattcaagagatacttgacaaggtagagctt
gatgcaagccaggttgaaaacatatatgatactcttgagagtatggggattgacgttgtt
gatgatagggtttcagaagaagagcttttaaaagacgacttggaaaatctacctgaaggt
attgctatagatgaccctgtgaggatgtatctcaaagagattggcaaaattccacttttg
acccctgaagaggagattgaacttgcaaagaggattgaacagggggatgaagaggctaaa
aagaggcttgctgaggcaaatttgaggcttgttgttagcattgcaaagaggtatgtggga
agaggaatgctctttttagatcttatccaagaaggtaatcttggtctattgaaggctgtt
gagaaatttgactacagaaaaggatataaattttccacatatgcaacatggtggattcgt
caggcaataacaagagcaattgcagaccaggcaagaactataaggattcctgtacacatg
gttgagacgataaacaagttagtgagagtatcacgtcagcttctgcaggaaaaaggaaga
gagccaacgcctgaagagattgcaaaagagatgaacatgccagttgaaaaggtgagagag
atactaaagattgcacaagaaccagtgtcacttgagaccccaattggtgaagaagaagat
agtcacttgggtgactttatccctgatgatgatgctcttgcgccatctgaagcagctgca
tattcaatgctcaaagagcagcttttagaggttttggattctttgaatgaaagagaaaag
aaggttttaaagctaagatttggccttgaagatggcagggcccgcaccttagaagaggtt
ggaaaggagttcaacgtaacaagagagaggatccgccaaattgaggcaaaggctttgagg
aaactaagacatccaagcagaagtaagaagctaaaggattttttggagtaa
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