Corynebacterium choanae: CCHOA_01250
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Entry
CCHOA_01250 CDS
T06925
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ccho
Corynebacterium choanae
Pathway
ccho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCHOA_01250 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccho03019
]
CCHOA_01250 (recQ)
03400 DNA repair and recombination proteins [BR:
ccho03400
]
CCHOA_01250 (recQ)
Enzymes [BR:
ccho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCHOA_01250 (recQ)
Messenger RNA biogenesis [BR:
ccho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCHOA_01250 (recQ)
DNA repair and recombination proteins [BR:
ccho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CCHOA_01250 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HTH_IclR
MarR_2
Motif
Other DBs
NCBI-ProteinID:
AZA12678
UniProt:
A0A3G6J6X5
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All DBs
Position
326070..328214
Genome browser
AA seq
714 aa
AA seq
DB search
MTTPPAQTDLEVAALQILRRLTKNPHAEFRPGQLEAITALVERRQHVLVVQRTGWGKSAV
YFVAALLLRAGFGSSDRPAHHPYPQGPAIIVSPLLSLMRNQIAAATQAGVVAVTINSGNA
EQWDAIAERIRARDVDVLLISPERLVNTDFQQGILQEIFAEVSLLVVDEAHCISDWGHDF
RPDYRRIRELINTIGADLPVLATTATANTRVMEDVAAQLGAGTVTLRGPLSRASLQLGVG
PVAPLEDHLAWLVDHVADMPGSGIIYTLTVNAAEDTAALLSAAGITAHAYTGRTDAATRE
ALEAALIANEVKVLVATSALGMGFDKPDLGFVIHLGAPSSAVAYYQQVGRAGRATKRAQA
ILLPSPSDAAIWAYFATAAMPAADTAYAVLAALQEATTPLSIPQLEQVVGVKRSRLELLL
KTLHVEGAVAKAGGKYQPGPQPNWEYDHARYAAVAKARRAEADAMRGYITTSECRMVYLA
HQLDDFTAQPCGICDRCQGPFFPTTIGDAARKHLNMLQSAPGIVLEVRKRWPNGLRQFGI
DYAGIINEQARAEPGRAVARATDLGLGQRLRELVTASDKDQPLPAELHDAIFATLHHWDW
DTRPTVVVGLPPREQPQLGHSLVKLISSAGRIPFAGSLRYTAGAGSRDVNSTFRVKHLAN
SLVLPPEVAAAVTGETVLLVDVDTASGWTFTVAAALLKDAGAQAVLPFALLQSR
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccccacctgcgcagacggatttggaagttgcggcgttacagatactgcggcgt
ttgacgaagaatccacacgcggaatttcgcccaggtcaactcgaagcgatcaccgcactc
gtggaacgtcggcagcatgtgctggtggtgcagcgcaccggatggggcaagtccgcggtg
tattttgtggccgcactgctgctgcgcgccggatttggttcatctgaccgtcctgcccat
cacccatatccgcaaggacctgcaattattgtcagccccttgctgtcactgatgcgcaac
cagattgcggccgccacccaagcaggtgtcgtggccgtcaccatcaactcaggcaacgcg
gaacagtgggatgcgatcgccgaacgtatccgtgcccgggacgtggatgtcctgcttatc
agcccggaacgactcgtcaacaccgactttcaacaagggatcctgcaggaaatcttcgct
gaagtctcactgcttgttgtcgatgaggcgcattgcatcagcgactgggggcatgatttc
cgccccgactatcggcgcatccgggaactgatcaatacaatcggcgcagacttacccgtc
ctggccaccactgcgacagccaatacccgggtgatggaagacgtcgccgcccaattaggt
gccggcactgtcacactgcgcgggccgctatcccgggcttccctgcagcttggggtgggg
ccggttgccccactagaggaccatcttgcatggctggtggaccatgttgccgacatgccc
gggtcgggaattatctacaccttgacggtgaatgcggctgaagataccgcggcactgcta
tccgccgcagggatcactgcacacgcctacaccggtcgcaccgatgcggcaaccagggaa
gcgctggaagcagcgctgatcgccaatgaagtgaaagtactcgttgccacgagtgcttta
gggatgggattcgataagcccgatctaggatttgtcatccacctgggcgccccatcgtcg
gcggtggcctactaccagcaagtagggcgtgccggccgcgcgacgaagcgcgcccaagcc
attttgctcccatcaccaagtgatgcagcgatttgggcatatttcgccaccgccgcgatg
cccgctgcagacaccgcatatgcggtgcttgctgccctccaggaggccaccacaccactg
agcattccccagctcgaacaggttgttggggtgaaacgctcccgcctggaactcttactt
aaaaccctgcacgtcgagggggcagtagcaaaagctggcggcaaatatcagccaggacca
cagccgaactgggaatatgatcatgcccgctacgcggcggtcgccaaggcgcgccgggcg
gaagcggatgccatgcggggctatatcaccaccagcgagtgtcgcatggtctatcttgcc
caccagttggatgatttcaccgcacagccgtgtgggatttgtgaccgttgccaaggaccg
ttcttccccaccaccattggggatgcggcgagaaagcacctgaacatgttgcaatctgcc
cccggcattgtccttgaggtgcgcaaacgttggcccaatgggttgcgccagtttgggatt
gactatgcggggattatcaacgaacaagctcgtgccgaacccggtcgggcagttgcccgg
gcaaccgatttaggcttaggtcaacggctgcgcgaactcgtcacagcaagcgataaggat
caacccctccccgcggagttgcacgatgctatttttgccacgttgcaccactgggactgg
gatacgcgccccactgtggtggttgggcttcccccacgagaacaaccccaattgggtcac
tcactggtgaagctcatctcgtcggccggccgtatcccctttgccggaagtctgcgctat
acggcaggcgccggttcccgggatgtcaacagcaccttccgggtgaaacacttggcgaac
tcgcttgtgttgcccccggaggttgcggcagcagtgaccggtgaaaccgtgctcctcgtc
gatgtggatactgccagtggttggacgtttactgtcgccgcagcactgctgaaagatgcc
ggtgcacaggcggtgttgccgtttgccctgttgcaatcccggtaa
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