Corynebacterium choanae: CCHOA_04375
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Entry
CCHOA_04375 CDS
T06925
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccho
Corynebacterium choanae
Pathway
ccho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCHOA_04375 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccho03019
]
CCHOA_04375 (deaD)
03009 Ribosome biogenesis [BR:
ccho03009
]
CCHOA_04375 (deaD)
Enzymes [BR:
ccho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCHOA_04375 (deaD)
Messenger RNA biogenesis [BR:
ccho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCHOA_04375 (deaD)
Ribosome biogenesis [BR:
ccho03009
]
Prokaryotic type
rRNA helicases
CCHOA_04375 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AZA13284
UniProt:
A0A3G6JB60
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All DBs
Position
1107427..1109691
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AA seq
754 aa
AA seq
DB search
MDADNQQGLQDNTNTNENDGVMKLEDVLGTTAAALSSEEGALLAEDNTISSDDNAEQAHD
TDEAAVDETSTEEPGIAEETETAATVDTAAAESGDAQTNEDNDDNADDSADEHGFAGLGL
PEQLLAAIKKVGFEQPSAIQAATIPLLTAGEDVVGLAQTGTGKTAAFALPILAGIDPQQK
KPQALVLAPTRELALQVADSFQSFADHLGRINVLPIYGGQAYGNQLAGLRRGAHIVVGTP
GRVIDHLKKGSLDISELRYMVLDEADEMLNMGFQEDVETILAETPETKQVALFSATMPQG
IRRIAKTYLNDPQEVTVKATTRTATNITQRYLHVAHRNKLDALTRILEVTEMDGMIMFVR
TKHETEELAEKLRARGFSAAAINGDIPQNLRERTVEQLKDGRLDILVATDVAARGLDVER
ISHVFNFDIPNDVESYVHRIGRTGRAGRTGEAILFVTPREKRMLRSIERATKATLEEMDL
PTIDEVNESRAGRFKDQITEALEDERVALFRKLVKSYADEHDVPLEDVAAALAVQSQSEG
DFFMKPEPKRERRDRDRDFDDRGGRDRGFGGRDRDRDRGPRRGGRPDRDDLTVYRIRVGK
RQGVGPGAIVGALANEGGLSNKDFGRITINGDHSLVELPVDLGKEVFDRLSDTRISGQLI
EIEHAPHANIEDREFGGRGGNRGGRGRFGGGRGRFDRDDRDDRGGRGGRGGRGGRFERDD
RGGRGRFDRDDRGGRGGRGRFDRDDRGGRGGWRD
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgataaccagcagggtttacaagacaatacaaacaccaacgagaacgacggt
gtgatgaagctggaagatgtactgggtaccactgcagcagcattatcttcggaagaaggt
gcactgctagcagaagacaacaccatcagcagtgacgacaacgctgaacaagcacacgac
acggacgaagcagcggtggacgagaccagcaccgaagaaccgggtattgctgaagaaacc
gaaaccgcagcaaccgtagacaccgccgccgctgaatccggcgatgcacagacaaacgaa
gacaacgatgacaacgccgacgattccgccgacgaacacggcttcgccgggctggggttg
cccgagcagctcctcgcagcaattaaaaaagtaggtttcgaacagccttccgcaatccaa
gcggccaccatcccgctgcttaccgccggtgaagatgttgtcggcttggcacaaaccggt
accggcaaaaccgctgcattcgcgctacctatcctcgccggaattgacccccagcagaaa
aaaccacaagccctcgtgcttgcccccacccgcgaacttgccctccaggtagccgactcc
ttccagtcgtttgccgaccatcttgggcgaatcaacgtgctgccaatctacggtgggcaa
gcctacggcaaccagcttgccggattgcgccgcggcgcccacattgtggtcggtacccca
gggcgtgtcattgaccacctgaaaaagggctccctcgacatctctgaactgcgctacatg
gtgctcgacgaagccgacgagatgctcaacatgggcttccaagaagacgtcgaaaccatt
ctcgcggaaacccccgaaaccaaacaggttgcactcttctcagccaccatgccacaaggc
atccggcggatcgcaaaaacctatcttaacgatccacaagaagttacggtcaaagcaacc
acccgcaccgcaaccaacatcacacagcgctacctgcacgttgcccaccgcaacaagctc
gacgcgctcacccggatcctcgaagtcaccgagatggacggcatgatcatgttcgtccgc
accaagcatgaaacagaagaactcgccgagaaactgcgtgcccgcggattctccgccgcc
gcaatcaatggcgacattccgcagaacctgcgggaacgcaccgtcgaacaactcaaagac
ggccgtctcgacattcttgtcgcaaccgatgttgccgcccgcggcctcgacgtggaacgc
atctcgcacgtcttcaactttgacatccccaacgatgtcgaatcctatgtgcaccgcatc
ggccgcaccgggcgcgccgggcgcaccggtgaagcgatcctgtttgttactcctcgtgag
aagcgcatgctgcgctctattgagcgggcaaccaaagcaaccctcgaagagatggatttg
ccgaccatcgatgaagtaaacgaatcgcgggctggccggtttaaagatcaaatcaccgaa
gcgctcgaagatgagcgggtggcacttttccgcaaactggtgaaatcctacgcggatgaa
cacgacgtgccgctggaagatgtggctgcagcattagccgtgcagtcccagtctgagggt
gacttctttatgaaaccggaaccgaagcgggaacgccgcgaccgggatcgtgattttgat
gatcgcggcggacgtgatcgtggcttcggtggccgtgaccgtgaccgtgatcgtggtccg
cgtcgtggcggccgccctgatcgtgatgatctcaccgtgtaccggattcgggttggtaaa
cggcaaggtgtcggtccgggtgccattgtgggtgccctggccaacgaaggtggtctgtcg
aataaagacttcggccgcatcacgatcaacggtgatcattccctcgtggaactgcccgtc
gatctgggtaaagaggtgtttgatcgtctcagcgacacccggatctctggtcagctcatt
gagattgaacacgcaccacatgccaacattgaggatcgggaatttggcggtcgcggtggt
aatcgtggcggccggggacgcttcggtggtggccggggacgcttcgatcgggatgatcgc
gacgaccggggtggccggggcggtcggggtggccgtggtggccgcttcgagcgcgacgac
cgtggtggacgtggccggttcgaccgtgatgaccggggtggtcgcggtggtcgcggacgt
ttcgaccgggatgatcgcggtggccggggcggctggcgcgactaa
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