Corynebacterium choanae: CCHOA_04545
Help
Entry
CCHOA_04545 CDS
T06925
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
ccho
Corynebacterium choanae
Pathway
ccho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCHOA_04545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccho03021
]
CCHOA_04545
03019 Messenger RNA biogenesis [BR:
ccho03019
]
CCHOA_04545
Transcription machinery [BR:
ccho03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CCHOA_04545
Messenger RNA biogenesis [BR:
ccho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CCHOA_04545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
HeH
Motif
Other DBs
NCBI-ProteinID:
AZA13317
UniProt:
A0A3G6J5J3
LinkDB
All DBs
Position
1154992..1157073
Genome browser
AA seq
693 aa
AA seq
DB search
MTTTQAQDLAKLTIPALRALAQERGIRGTSGKRKGELIAMLSGQTPAVGDSSPRRSTRRR
ASAESAEAEQAAPATNRSRRRAGADEQAESAAPSAGSESADNSGEQQRGPRTRRRVRRDD
NDRRGTAKDDNATGDDRKAEAGDAARPEQDQSRGDSNDRDNQDRGGRTRRRSSRSRDDQT
DREDNANSREQDNDRSEEQDGDDSQRFESRSAARRARRNRQRGQGNNRRRDNDQDNDNRS
RNNRDRDRDRDRDRDDDSRDRRGRRNRDRDEDRRSRRGRRDRRGRNRDNASNPTEIREDD
VLQAVGGIVDIIDGNVAFLRTAGYHAGPSDVFIPNQLIKKSGLRSGDAVTGQVKAPREGQ
SLQTYGTGRNRGKYNSLVRVDTINGQTPEEVADRPQFAKLTPLYPNQRLRLETDAKVLTT
RVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNNPECYLMVVLVDERPEEVTDM
ERSVRGEVIASTFDRPPSEHTAVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNSSP
ASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFEEFKGTG
NAELKLDRKISERRVFPAVDVNPSGTRKDELLLVPEEARIMHKLRRILSALDSQQAIDLL
IKQLKKTKSNSEFMMQIASSATMAAVESEEDYS
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaccactcaagcccaagatttggcgaaactaactattcctgcgcttcgggcactc
gcccaggagcggggaattcgtggtacttccggtaaacggaagggcgaacttatcgccatg
ttgtcgggtcaaaccccggctgtaggcgacagctcgccacggcgcagcacccgccggcgg
gcaagcgcggagagcgcagaagcagagcaggctgcaccggctacgaaccgatcacgccgc
cgggcaggagcagatgaacaagctgaatctgctgcgccttcggctggttcggaatctgcc
gacaacagtggtgaacagcagcgtggtccgcggacacgtcgtcgggttcggcgtgacgac
aacgatcgtcgcggcaccgcgaaagatgacaacgccactggtgatgatcggaaggcagag
gctggcgatgcagcccgcccagaacaagaccagtcccgcggcgacagcaatgatcgcgac
aaccaagaccgtggcggccgtacccggcgccgctcttcccgcagccgcgacgaccagact
gatcgggaagataacgctaactctcgggagcaggataacgaccgctctgaagagcaagac
ggcgatgattcgcagcgcttcgaatcacgatctgctgcacgccgggctcgtcggaaccgg
cagcggggacaaggcaataaccgtcgccgtgacaacgatcaggacaacgacaatcggtca
cgcaacaaccgtgaccgtgaccgtgatcgggatcgtgaccgcgacgatgattcccgggat
cggcggggtcgccgcaatcgggatcgcgacgaagatcgtcgatcccgccgtggccgccgt
gatcgccgaggccgcaatcgtgacaacgcatcgaatcccaccgagattcgggaagatgac
gtgttgcaggcagtcggcggcatcgtcgacattattgacggcaacgtggcattcttgcgt
accgccggttaccatgccggcccgtcggatgtgttcatcccgaaccaactgatcaaaaaa
tcggggctgcgttccggtgatgcggtaaccggtcaggtgaaagcgccacgcgaaggccaa
tcgctgcaaacctacggcaccggccgcaaccgcggaaaatacaattcgcttgtccgggtg
gacaccatcaacggtcaaaccccagaggaagtcgccgatcggccgcaattcgcgaagctc
accccgctgtatccaaatcagcggcttcgcctagaaaccgatgccaaggtgctcaccacc
cgcgtgatcgatctgatcatgcctatcggtaaggggcagcgtgcattgatcgtttcccca
ccgaaggctggtaagacgacaatcctgcagaacattgccaacgctatcgcgaccaacaac
cctgagtgctatctcatggtggtgctggtggatgaacgtcccgaagaagtcactgacatg
gaacgttcggtgcgcggcgaagtgattgcctccaccttcgaccggccgccaagcgaacac
acggctgttgctgaactggccattgagcgtgcaaaacgtctcgtcgaacagggcaaagat
gtcgttgtgctgctcgactcgatcacccgtctgggtcgtgcctacaacaactcgtctcct
gcgtcagggcgtattctctccggtggtgttgactctaatgcgctctacccaccgaagcgc
ttcttgggcgctgcccgcaatattgaaaatggtggatcattaaccattatcgccaccgcc
atggtcgaaaccgggtctgccggcgacactgtgatcttcgaagagttcaagggcaccggt
aacgctgaactgaaactcgaccggaagatctccgagcgtcgcgtcttccctgcagtggat
gtgaatccttccggcacccggaaagatgaactgctgctcgtgccggaagaagcccggatt
atgcacaagctgcgccggatcctgtcggcactcgacagtcagcaggccattgatttgctc
atcaaacagctgaagaaaaccaagtcgaacagtgagtttatgatgcagatcgcgtcatcg
gcgacgatggcagccgtcgaaagtgaagaggactactcgtaa
DBGET
integrated database retrieval system
