Corynebacterium choanae: CCHOA_06835
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Entry
CCHOA_06835 CDS
T06925
Symbol
hrpB1
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ccho
Corynebacterium choanae
Brite
KEGG Orthology (KO) [BR:
ccho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccho03019
]
CCHOA_06835 (hrpB1)
Enzymes [BR:
ccho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CCHOA_06835 (hrpB1)
Messenger RNA biogenesis [BR:
ccho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CCHOA_06835 (hrpB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
ResIII
NACHT
GlutR_dimer
T2SSE
AAA_25
PhoH
ABC_tran
AAA_23
Host_attach
TsaE
Motif
Other DBs
NCBI-ProteinID:
AZA13759
UniProt:
A0A3G6J7A6
LinkDB
All DBs
Position
1707403..1711488
Genome browser
AA seq
1361 aa
AA seq
DB search
MTAYPQHTGNNEAGHSNSTAHPPANHTAADKNATPQPRSNKARHPQRTHRTNGKKASKQH
DDARQTAPTIAELREQLDEMTTANQRRFRARLHKARSPQARRAIANDIARARADYAAKLA
AIPPITYPEQLPVTARRDDIAEAINTHQVVIIAGETGSGKTTQIPKICLELGRGRHGMIG
HTQPRRLAARTVAERIADELAQPIGTTVGYAIRFDDRVSNTTAIKLMTDGILLTEMTRDR
YLNAYDTIIIDEAHERSLNIDFLLGYLKEILPKRPDLKVIITSATIDPERFANHFTDSAG
NPAPIIEVSGRTYPVEIRYRPLVHTDADGKEFDIDPIDGLLDALKELMREGSGDILCFFA
GEADIRDAQEAIEGAKFTNVEVVPLFGRLSNQDQHKVFRPHSRRRIVLATNIAETSLTVP
GIHYVVDTGFARISRYSSRTKVQRLPIEPISQASAQQRSGRCGRVADGVAIRLYSEQDFL
ARPEFTDPEILRTSLAAVILQMAALRLGDITEFPFIEPPETKQVRDGLLLLHELGALDNQ
EVSGGPKLTDIGRALARIPVDPRMGRMLYEARTNGVLYEVMIIVAALTIQDVRERPLEFQ
AQADQAHARFHHATSDFLAYLQLWRYLTSQRAALSGNQFRKTLAREYLHYMRVREWFDLL
RQLNSVVEQLGWNVTETLPETVDEDRIHQSLLAGLLSHIGVKQADSKEYAGARNTKFMIF
PGSRLAKKPPQAVMAAELVETSRLWARDVGKIQLSWVESLAPHLLRHNYSEPHWSTKRRA
AMVYQKSTLYGVTVVTDRLVPYHRVDPHAARSLFIRHALVYGEWSTHHEFFHNNRRKLDE
AVELEEKARRRDIVVDEDTLFDFYDAKLPASITTGTLFDHWWKKQRRSNPALLDFDPDAL
IADADHDVTEVAFPDRWRQGSIDYELRYHFAPGAADDGVTVAVAVPLLGNIRDEGFDWLV
PGLREELVTELIRTLPKPLRRTVVPAPEYARRALDYLKPYHGTITEQLGDILRSFGAAGI
DAQDFQPNKLPPHLQMSFAAIDKSGKVIDRDRDLSALKSRNQGQISSSLGKVAKTHATKA
APNWDERIGDVAEEVTTTVDGQHVTAFPALTVTAAGVEVVVYPTKAQADAALLTANLTLL
SRAVTISDKQMVKGLPLQQRVAIDRYPHGGLAGLVEDAKMAVIRDLLMQQGEPARTLEAF
EELKTRLAPEVPKRVRQVVVALAPGIAAYVNMQQELQQWQGPAIDEMIEQLAAMLPPHAI
ARFGATKLIHLPRYIEAMQRRLELMSQDPDRDADLQDQVLEAQQYLAKRLEKLPANRANS
AAAKEIFWMIEELRVSLFAQQLKTPKPVSVKRIQKAVDKLR
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgactgcatatccccagcacaccggcaataacgaagcaggccacagcaacagcaccgca
catccgccagcaaaccacacagcagcggacaagaacgcaaccccacagccacgcagcaac
aaagcacgccacccgcagcgcacgcaccggaccaacggtaaaaaggccagcaagcagcac
gacgacgcccgtcaaacagcgcccactatcgcagaactgcgcgaacaactcgatgagatg
accaccgccaaccagcggcgattccgggcacgattacacaaagcacgatcaccacaggcg
cggcgcgccatcgccaacgatattgcccgggctcgcgcggactacgcggccaagctagca
gcaatcccaccaatcacctatcccgaacaacttccagtcaccgcccggcgagacgacatt
gccgaagcaatcaatacccatcaagtcgtcatcattgccggtgaaaccggctccggaaaa
accacacaaataccaaagatctgcctcgaactcggccgcggccgacacggcatgattggc
cacacccagccacgtcgattggctgcccgaaccgttgctgaacgtatcgccgacgaactg
gcacaacctattggcaccactgtcggttacgccatccgttttgacgaccgagtaagtaac
accaccgccatcaaactcatgactgacggtatcttgctcacagagatgacccgcgatcgg
tatctcaacgcctacgacacgatcatcattgacgaagcacatgagcgcagtctcaacatt
gactttctgctcggctacctcaaagagatcttgccgaaacgccccgatctcaaagtcatc
atcacctccgcaactatcgacccggaacggtttgccaatcatttcaccgactccgccggg
aaccctgccccaatcattgaagtatccgggcgaacatatcccgtagaaattcgctatcgg
ccactggtacacaccgacgccgatggcaaagaattcgacattgaccctatcgacgggctc
cttgatgcactcaaagagcttatgcgtgaaggcagcggagacattttatgtttctttgct
ggtgaagctgacatccgcgatgcgcaagaagcaattgaaggggcaaagttcaccaacgtc
gaggtggtgccgcttttcgggcgcctatcaaaccaagatcagcacaaagtatttcggccg
cactcccgccgacgcattgtgttagccaccaatattgccgaaacatcactcaccgtgccc
ggtattcactatgtggtggatactggatttgctcgaatatcgcgctactcgtcgcgtacc
aaagtccaacgcctgccgatcgaaccaatctcgcaagccagcgcacaacagcgatcaggt
cgctgcggtcgtgtcgccgacggtgtagccattcgactctattcggaacaagacttcctc
gcccgacccgaatttaccgatccggaaattttacgaacctccctagccgcggtcattttg
cagatggctgcgctacgcctcggtgacatcaccgaatttccgtttatcgagccccctgaa
acgaaacaagtccgtgacgggctgttgctacttcacgaacttggtgcactcgataatcaa
gaagtatccggcggtccgaagctcactgacattgggcgggcgctggcacgaatcccggta
gacccacgcatggggcgcatgctgtacgaggctcgcaccaacggggtgctctacgaagtc
atgattattgttgcggctctgacgattcaagacgttcgcgagcgtcctttggaatttcaa
gcccaagcggatcaagcccatgcacgcttccaccatgcaacatccgacttccttgcctac
ttgcagctatggcgctaccttacttcgcaacgcgcagccctgtccggtaatcaattccgc
aaaacgcttgcccgcgaatatttgcactatatgcgggtgcgcgaatggtttgatctgttg
cggcagctcaacagtgtggtcgaacaacttggctggaacgtcaccgaaacgcttcctgaa
acagtcgacgaagatcgcatccaccagtctctgctggcagggttgctctcccatatcggg
gtgaaacaagccgacagcaaagaatacgccggtgcccgtaacaccaagtttatgatcttc
ccaggatcccgcttggcgaaaaaaccaccgcaagctgtgatggctgctgagctggttgaa
accagccgactgtgggctcgagatgtcggtaaaattcagctgtcatgggttgagtcactg
gctcctcacctgttgcgacacaactattccgaacctcactggtcgacaaagcgacgcgcc
gcgatggtatatcaaaaatcgacgctgtacggggtcacagtcgtcactgatcgcctcgtc
ccataccaccgtgtcgatccacatgcggcacgttcgctgtttattcgccatgccctggtc
tatggcgaatggtctacccatcacgaattcttccacaacaatcgacgcaaactcgatgag
gcagtcgaattggaagaaaaagctcgacgccgtgacattgttgtcgacgaggacaccctc
tttgacttctacgatgccaagttaccggcatcgattaccaccggcacgctgtttgatcat
tggtggaaaaaacagcgtcgcagcaatcccgccctgttggatttcgatccggacgcactg
attgccgatgcggatcatgacgtcacagaggtggccttccctgatcggtggcggcaaggc
agcatcgactatgaactgcgctatcactttgcaccgggtgcagctgacgatggcgtaact
gtggctgtggccgttcccttattgggcaatatccgcgatgagggctttgactggctagtc
cccgggttgcgggaagaacttgtcaccgagttgatccgtaccttgcctaaaccgcttcgg
cgcactgttgtaccagcgccggaatatgcgcggcgggcactcgactatctcaagccgtac
catgggacgatcaccgaacaactcggcgacatactgcgttcctttggggctgcgggtatc
gacgcgcaagacttccagccgaacaaactgccgccacatttgcagatgagctttgcagct
atcgataagagcggcaaggtaatcgaccgtgaccgggatctttcagcgttgaagtcccgt
aaccaaggacagatctcttcgtcgcttggcaaggttgccaaaactcacgcgacaaaggct
gcaccgaactgggatgaacgcattggtgatgtcgccgaggaggtaactaccaccgtcgac
ggtcagcacgtcacggccttccctgccttgaccgtaacggccgctggtgtcgaagtggtt
gtctatccaacgaaggcccaggcggatgctgccctgctcaccgcaaatctcacgcttctt
tcccgggcagtaacaattagcgacaaacaaatggtcaaaggtttgccactgcagcagcgt
gtcgctatcgatcgttatccgcacggcggattagcggggctggtggaggacgccaaaatg
gctgtgatccgggacttgttgatgcagcagggtgagcccgcacgcacactcgaagccttc
gaagaactgaaaactcgcctcgcacccgaggtaccgaaacgtgtccgccaggtcgtagtg
gcactagcgcctggtattgccgcttatgtcaacatgcagcaggaactccagcaatggcaa
gggccggctatcgatgaaatgatcgaacagctagcggcaatgctgcctcctcatgcgatt
gcacggtttggagcaaccaaattaatccatttaccgcgctatatcgaggctatgcagcgc
cggctagaactgatgtcgcaagatcctgatcgtgacgcagacctgcaagatcaagttctt
gaagcgcaacagtatctagcgaagcgactggaaaaattacctgcgaatcgggcgaattcg
gcagcggcaaaagaaatcttctggatgattgaagagttacgagttagtttgtttgcacaa
cagctgaaaacaccgaagccggtgagcgtaaaacgcatccaaaaagcagtcgacaagctg
cgctaa
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