KEGG   Corynebacterium choanae: CCHOA_08635
Entry
CCHOA_08635       CDS       T06925                                 
Symbol
rne
Name
(GenBank) Ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
ccho  Corynebacterium choanae
Pathway
ccho03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccho00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CCHOA_08635 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccho03019]
    CCHOA_08635 (rne)
   03009 Ribosome biogenesis [BR:ccho03009]
    CCHOA_08635 (rne)
Enzymes [BR:ccho01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     CCHOA_08635 (rne)
Messenger RNA biogenesis [BR:ccho03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CCHOA_08635 (rne)
Ribosome biogenesis [BR:ccho03009]
 Prokaryotic type
  rRNA processing factors
   CCHOA_08635 (rne)
SSDB
Motif
Pfam: RNase_E_G IF2_N
Other DBs
NCBI-ProteinID: AZA14116
UniProt: A0A3G6J805
LinkDB
Position
complement(2145107..2149525)
AA seq 1472 aa
MARQQSPTTTQSASKPRRRRSNAATASTGDTSASATPRGKRTTKAGGTNDKAASKQQAVE
QTPKKAAKKTAKKTATKTAAAKKKQSTTASTTGNKAAAKPATSRRTRTAQKNTTKARGVT
DKKVREQSAKAVDPVIEDLVQVSKETAKNSQQLTGVSEATIAAAREIDRSTLGEKLRVHQ
LAKLLGLVSKELVALLAQVGIEKKAVSSITYAEAALMLDKLVEPTLDTGDQTVEVIRYRV
GKNVENEIHQIESKIEEELEQRLDETPAVIEQEPDSLVDDDPSAVADQTESAQHEALQAE
DAQAADAEDDDDEEDDEELDVDIELDDDDFLDEDYEFDDDHDDDDDQDEELVAPPVIDIR
AAAAAEVHAELLEDVVSASTPVPADTNYETPLFKAPVVVPGPAPVAPPSDDQRESTQAER
GPRRVEEPLGIKGSTRLEAQRRRRVERRRDGQRNDFQPISDAEFRKRRQAIHREMVIRDR
QRHDGRGTVTQAVVVEDGKTVEHYITTDTQNSTLGNIYLGRVQNVLPSMEAAFIDIGTGR
NAVLYAGEINWRNTGLTNRNRRIENILKSGDQVLVQVAKDPVGHKGARLTTQISLAGRFL
VYVPEGRSAGISRKLPESERRRLKGILKQILPDDGGAIIRTAAEGVSAEEIGNDADRLLK
QWASIQEITAKEKAKKGAKPVTLYEEPPLLVKLIRDLFNEDVTKLTIDGAASHDVVTNYV
SRMAPDLLDRIEQWDRHAQGGVDAFVGLDIEPQLAEALSRKVWLPSGGSLVIDYTEAMTV
IDVNTGSNTGKSGNLEQTVTANNIEAAEEIVRQIRLRDIGGMIVIDFIDMVLEENQDLVL
RRLAEALMHDRTRHQLGEVTSLGLVQITRKRLGGGLQESFTTECQHCAGSGRVTHDDPVL
DWQRNTVFDDRKSRRKAKEDKKKRAAEQAAKSTQKPARPVGEHPAAAALHRQHTDGDSAG
TLDREQNGDTAQHPPAASAASTSLESTAREDHHDGSAQSDSTSERKQAAATAHDTAATES
GDDRVKTANTRSRRRRRAGRSATAQAAGAEQVDNTTDVAAATDTDPAAPADQGETTSHVP
AAPSGSRGRRRRRAAMPQPASTQSGATKSDQHSAHPADNTPQDSVEAESQAGAAPQPHAG
QSATPAGAKRGAKRRRARTTPGEQRAQDTVAIALDALATADREDPDEPSGRSYVPDEQYQ
TQQENTASKAEAAADDNGEAAYRAAVEAFERSPRRQRRVRGNSRSDVPPKRSDFISGPMG
SDGIDSLDDQPAKESDTASNSDTTPGNSPAAVPTRRRSGRKRVRAGAPTVNPTSVDDTVA
STTADDSDTLSTNEKKQSAQHPPAAAAAEPTPASGKPRRGRRRAVRTSAVEHQSHTQQPG
KDNSTQQQQETVNTAGQAVGNRKQQTVVETSVDSAAPARRGRGRRRAAMRSTQVMHNQEK
AAALSATVAQPEQPAARERNRSRSTRRSTRRK
NT seq 4419 nt   +upstreamnt  +downstreamnt
atggcgcgacaacagtccccaacaactacacaatccgcaagcaaacctcgtcgacggaga
agcaacgctgccaccgcatcaacaggtgacacgtcggcaagcgcaaccccgcggggtaag
cgcaccaccaaagctggcggcaccaacgacaaggcagcatccaagcagcaggctgtagag
caaaccccgaagaaagcggcaaagaaaacagcgaaaaaaaccgcaacgaaaactgctgca
gcgaagaaaaagcagtcaacgacagccagcaccacaggcaacaaggccgcagcaaaacct
gcaactagccgtcgcacccggactgcgcagaagaacaccaccaaggctcgtggcgtgaca
gacaaaaaagtccgcgaacagagtgcgaaagcagtcgatcctgtcattgaagatctcgtg
caagtttctaaagaaaccgcgaaaaactcccaacaactcaccggcgtatcggaggcaacc
attgctgccgcccgcgagattgatcgcagcacccttggggaaaaactgcgcgttcatcaa
ctagcgaaactccttggactggtatccaaagaactcgtcgcactgttggcacaggtcggc
atcgaaaagaaagccgtctcgtcgatcacctatgcagaagctgcgttgatgctcgacaaa
ctcgtggaaccaaccctcgacaccggcgaccagacagtggaagtcatccgctatcgggtg
gggaaaaacgttgaaaacgagattcaccaaatcgaatccaaaatcgaagaggaactcgaa
caacggcttgacgaaaccccggctgtaatcgagcaagagccagacagcctggtcgacgat
gatccctcagcagtagccgaccagaccgaatcggcgcagcatgaagcccttcaagcagag
gatgcacaggccgctgacgccgaagatgacgatgatgaggaagacgacgaggaactcgac
gtcgatattgaactcgacgatgacgacttccttgatgaagactacgaattcgacgacgac
catgacgacgatgacgatcaagacgaagagcttgttgccccgccagtgatcgacatccgt
gccgctgccgccgcagaagtgcacgctgaactgttggaagacgttgtttcggcatcgacc
ccggttcccgccgacactaactatgagacaccactgtttaaagcaccggtggttgtgcca
ggtccggcaccggttgcaccaccaagcgacgatcagcgggaatctacccaagcagaacgc
ggtccacggcgggttgaagaaccgttagggatcaaaggatccacccgcctcgaagcgcag
cgtcgccgacgagtagaacgccgtcgggacggtcagcgcaacgatttccagcccatcagt
gacgctgaattccgcaagcgccggcaggctattcaccgcgaaatggtgattcgtgaccgg
caacgtcacgacggccggggaacggtcacccaagctgtggtggtggaagatggtaaaacc
gtagagcattacatcaccaccgatacgcaaaactcgaccctgggcaatatttatcttggc
cgggtacaaaacgtgctgccgagtatggaagcggcgtttatcgatattggtactggccgc
aatgcggtgctttatgccggtgagatcaattggcgcaacaccgggttgactaaccgtaat
cggcggatcgaaaacattttgaaatccggcgatcaagtgctcgtccaggtcgcgaaagat
ccggtcgggcataaaggtgcccgtttgaccacccagatttcgttggctggacggttcctg
gtttacgtcccagaagggcgttccgctggtatttcccggaaactccccgagtcggagcgg
cgccggttaaaagggatcctaaaacagatcctgcccgacgacggtggggctattattcgc
acggccgcggaaggcgtttctgcggaagaaatcggcaatgatgcggatcgcctgctcaaa
cagtgggcaagtattcaagagatcacagcgaaagaaaaagccaaaaaaggtgccaaacca
gtcaccctctatgaagagccaccgctgctggtcaaacttattcgcgacctgttcaatgag
gatgtcaccaagctgaccattgacggggctgcctcgcatgatgtggtgacaaactatgtt
tcccgaatggcacccgacctgctggatcgtatcgagcagtgggatcgtcatgcgcagggt
ggggtagacgcatttgttggtctcgatattgaaccgcaactcgccgaggcgctatcgcgc
aaagtttggctgccaagcggcggatcgttggttattgactacaccgaagcgatgacggtg
atcgacgtcaacaccggatccaacaccggtaaatcaggcaatctggagcaaaccgttacc
gcaaacaacattgaggctgccgaggaaatcgtgcgccaaatccggttgcgggatatcggc
ggcatgattgtcatcgactttatcgacatggttttggaagaaaaccaggatctcgtgttg
cgccgacttgccgaagcgttaatgcacgaccgcacccggcatcagctcggagaggttacc
tccctcggcctggtacagatcacccggaaacgactcggcggtggtttgcaagagtcgttt
accaccgaatgccaacactgtgccggctctggtcgagtcacccacgatgatccagtgctt
gactggcagcgaaacacagtatttgacgaccggaagtcgcgccgcaaagcaaaagaagac
aaaaagaagcgtgcagctgagcaggccgcaaaatcaacgcagaaaccggcgcggccggtg
ggggagcatcctgcagcagccgcgttgcatcggcaacacaccgatggcgactccgctggg
acgctcgaccgtgagcaaaacggcgacactgcacagcatccgcctgcagcatcagccgca
tccacctccctggagtcgacagctcgcgaggatcatcacgacggttcggcacagtcggat
tcgacgtcggaacgcaaacaggctgcagctacagcgcatgacactgccgcaaccgaatct
ggcgacgatcgtgtcaagactgcaaatactcgatcacggcgtcgtcgtcgtgccggtcgg
tcagctactgcacaagcagcaggtgccgaacaggtagacaatacgacagatgttgccgcc
gccacggacactgatcctgcagcacctgccgatcagggtgaaacaacttcccatgttcca
gcagctcccagcggatcgcgtggacgccgccggcggcgggctgcaatgccgcagcctgca
agcacccaatcaggtgccacgaaatccgatcagcacagtgctcatcctgcggacaacacc
ccgcaggatagcgtggaagcagaatctcaagcaggcgcagcacctcagccgcacgctggg
cagtctgcaacaccagctggtgcgaaacgaggcgccaagcgtcgacgtgcccgcaccacc
cccggtgagcagcgggcgcaagacacggtcgcaatcgcccttgatgcattagcgaccgcc
gatcgggaagaccccgatgagcccagcggccgttcctatgtgcctgatgagcaataccaa
acccagcaggaaaacaccgcttcgaaagcagaagcagctgctgacgacaacggtgaagct
gcttatcgggctgctgttgaagcgtttgaacgctccccaaggcggcaacgtcgggtgcgg
ggtaactctcgttccgatgtgccaccaaaacgcagcgactttatctccggtccaatgggc
agcgatggcatcgattccctcgatgaccagccagccaaggaatcggacactgcttccaac
agcgacaccaccccaggtaactcgcctgctgcggttccaaccaggcgccgcagtggacgc
aaacgggtgcgagccggtgctcccacagtcaacccgacatctgtggacgacactgtggca
tctaccaccgctgacgattcagacacgttgtctaccaacgaaaagaaacagtcagcacag
cacccaccagccgctgccgcagcagaacctactcccgcgtcagggaaaccccgccgcgga
cgtcgccgtgctgtccgcaccagtgctgtcgaacaccaatcccacacgcagcaacctgga
aaagacaacagcacgcaacagcagcaggaaaccgtcaacaccgccggccaagctgttggc
aaccgcaaacagcaaaccgtcgtcgaaacaagtgtggacagtgccgcgcctgcgcgtcgg
ggacgtggtcgtcgccgcgcagcaatgcgcagcacacaggtgatgcacaaccaggaaaag
gctgcagcattgtcggcgacggtagctcaaccggagcaacctgcagcacgcgaacgaaac
cggagccgatcgacacgccgatcgacacgccggaaatag

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