Corynebacterium choanae: CCHOA_10270
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Entry
CCHOA_10270 CDS
T06925
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccho
Corynebacterium choanae
Pathway
ccho03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccho00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCHOA_10270 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccho03021
]
CCHOA_10270 (rpoC)
03400 DNA repair and recombination proteins [BR:
ccho03400
]
CCHOA_10270 (rpoC)
Enzymes [BR:
ccho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCHOA_10270 (rpoC)
Transcription machinery [BR:
ccho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCHOA_10270 (rpoC)
DNA repair and recombination proteins [BR:
ccho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCHOA_10270 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AZA14437
UniProt:
A0A3G6J8P4
LinkDB
All DBs
Position
complement(2532999..2537018)
Genome browser
AA seq
1339 aa
AA seq
DB search
MYTTVLDVNFFDALRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTR
DWECACGRYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGY
LLDLAPKDLDRIIYFSANIITSVDEEARHNDLTTLEAEMLLEKKDVEAEAENQIAERAQK
LEQDLAELEAAGAKADARRKVQNAAEKEMQHIRERAGREIDRLDEVWNTFVNLAPKQMIP
DETIYAELIDRYEDYFTGGMGAEAIQTLIKNFDLDAEAEELRRVIREGRAGQRKTRALKR
LKVVAAFQRSENQPEAMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLK
RMIDLGAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRSLKSLSDLLKGKQGRFRQ
NLLGKRVDYSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKGLVQKAAAQNIKSAKRM
VERHHPEVWSVLEEVISQHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNAD
FDGDQMAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYFLTLEKQPD
EVGGQGAYQPATDTAPAQGVYSSVAEAIMAYDRGVLGLQAPIKVRISHLRPPAEIEAELF
EHGWQRGQTWLASTTLGRIMFNDLLPWNYPYLEGVMVRKGGGTDKIMLGDVINDLAARYP
MITVAQTMDKMKDAGFYWATRSGVTISMSDVLVLPNKSEILDEYEAEARAIERKYYQEGK
LTKQERYDRLVELWKNATDKVGKAVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMV
VNSKGDYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDV
IVREEDCETRQGVKVPVAVPVQDASGVTVGYRRHDLIETSVHGRVLAVDYTNSDGEVVLA
AGTELGEEEVDVLVKAGAETVKLRSVLTCQTATGVCAKCYGRSMATGKQVDIGEAVGIVA
AQSIGEPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNKAPIASVPGTVKLEDEG
NFWTLTITPDDGGDDVVYEKLSKRQGLAMKRVPMESNPEAMIERHLQDGDHVELGERLLR
GPADPHDVLEIQGRRGVEQHLIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGST
EFLPGTLVDLAVAKQANAEARKAGLEIAELRSEIMGITKASLATESWLSAASFQETTRVL
TDAAINRRSDQLIGLKENVIIGKLIPAGTGISQYRNIMVKPTERARNASYTVPSFGDSVY
GDDFTHDFTGAAVPLDDYS
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgtacactactgtgctcgacgtcaacttcttcgacgcactccggattggcctggccacc
gcggacgatattcgccgctggtcgaaaggcgaagtgaaaaagccggagaccatcaactac
cgtactttgaagccggaaaaggacggtctgttctgtgaacggatcttcggtcctacccgc
gactgggaatgtgcctgtggccgctacaagcgggtgcgctataagggcattatttgtgaa
cgctgtggtgtggaagtcaccaagtcgaaggtgcgccgtgagcggatgggccatattgag
cttgccgccccggtaacccatatctggtacttcaagggtgtgccctcccggttggggtat
ctgctggatttggctccgaaggatcttgaccggatcatctacttctcggcgaacattatt
accagtgttgacgaggaagcccgccacaatgatctgacgactctggaagcagaaatgctg
ctggagaagaaggatgtggaggctgaggcggaaaaccagatcgccgagcgtgcccagaaa
ctcgagcaggatttagccgagttggaggccgccggggcgaaagctgacgcccgccgcaag
gtgcaaaatgctgccgagaaagaaatgcagcatattcgggagcgtgccggtcgggagatt
gaccgtctggacgaggtgtggaacaccttcgtcaacctggcaccgaagcagatgatcccc
gatgagacgatctacgctgagcttattgaccgctacgaggattatttcaccggcggtatg
ggtgcggaagcaatccagacgctcattaagaactttgacctcgatgcggaagcggaagag
ctgcgccgggtcatccgggaaggtcgtgccgggcagcggaaaacccgtgccctgaagcgg
ctgaaggtggtggctgcattccagcggtcggaaaaccagcctgaagctatggtgctggat
tgtattccggtgatcccgccagagctgcgtccgatggtgcagcttgacggtggtcgtttt
gcgacctcggacttgaacgatctgtatcgtcgcgttatcaaccgcaataaccgtctcaag
cggatgattgatctcggcgccccggagatcattgttaataacgaaaagcgcatgctgcag
gaagcagtggacgcgctgtttgacaatggtcgtcgtggccgtccggtgaccggtcctggt
aaccgcagcctgaagtcgctgtcggatctgctcaagggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgtgtcgactattctggccgttcggtgattattgtcggcccgcag
ctgcggctgcacgaatgtggtttgccgaagctgatggccctcgagctgttcaagcctttc
gtgatgaagggcttggtgcaaaaagctgctgcacagaatattaagtccgccaagcggatg
gtggaacgtcaccatcctgaggtgtggtcggtgctggaagaagtgatctcccagcatccg
gtgatgctcaaccgtgcacctaccctgcaccgcctgggtattcaggctttcgagccggtg
ctggtggaaggtaaagcgatccagctgcacccgctggcctgcgaagcgttcaacgccgac
ttcgacggtgaccagatggcagtccacctgccgcttagcgccgaagcgcaggctgaagcc
cgtattttgatgctggcttcgaataatattctgtcgcctgcttccggtaagccgctggcg
atgccacgtctggacatggtcactgggttgtacttcctcaccttggaaaagcagcctgat
gaggttggtggccagggtgcctaccagccggcaaccgacaccgcccctgcccaaggcgtg
tactcgtctgttgctgaggcaatcatggcctatgaccggggtgtgcttggtttgcaagcc
ccgattaaggtgcggatctcgcatctgcgcccacctgcagagatcgaggcagagctgttt
gagcatggctggcagcgcggccaaacctggctggcgtcgaccaccttgggtcggatcatg
tttaatgatctgctgccgtggaactatccatatctggaaggtgtgatggtccgtaagggc
ggtggcaccgacaagatcatgctcggcgatgtcattaacgatctcgctgcccgctatccg
atgatcaccgtggcacaaaccatggacaagatgaaggatgccggcttctattgggcaacc
cgttccggtgtgacgatctctatgtcggacgtgctcgtgctgccgaacaagtcggagatc
ttggacgagtatgaggcggaagcccgggcgattgaacgcaagtactaccaggagggcaag
ctcaccaagcaggagcgctacgaccgtctggtggaactgtggaagaacgccaccgacaag
gtcggtaaggctgtggaagacctgtatccggatgacaacccgattccgatgatcgtgaag
tctggtgcggccggtaacatgcgtcagatctggacgctggccggtatgaagggcatggtt
gtgaactcgaagggtgactacatcacccgcccgattaagacctccttccgggaaggcctg
tcggtgctcgagtacttcaacaactcgcacggttcccgtaagggtctggccgatacggcg
ctgcgtaccgccgactcgggttacctcacccgtcgtctggtcgacgtcgcgcaggatgtt
attgtccgcgaggaggactgcgaaacccgccagggtgtcaaggtgccagtcgcggtaccg
gtacaagatgccagcggggtcaccgtcggctaccgtcgccacgaccttattgaaacctca
gtgcatggtcgggtgctggcagttgactacaccaacagcgacggtgaagtggtgcttgcc
gctggtaccgagctgggtgaagaagaagtcgatgtgctggtcaaggccggtgcggagacg
gtgaagctgcgcagtgtgctcacctgtcagactgctacgggtgtgtgcgcgaagtgctac
ggccgctccatggcaaccggtaagcaggttgatatcggcgaagctgtcggtattgtggcc
gcccagtccattggtgagccgggtacccagctgaccatgcgtaccttccaccagggtggt
gtcggtggtgacattaccggtggtctgccgcgtgtgcaggaactcttcgaagctcgtgtg
ccgaagaacaaggcaccgatcgcctctgttccgggcacggtgaagctggaagatgaaggc
aacttctggacgctgactatcacccctgatgatggtggcgacgatgttgtctacgagaag
ctgtcgaagcggcagggtctggcgatgaaacgggtgccgatggaatccaacccggaggcc
atgatcgaacggcatctgcaagacggcgaccatgtggaacttggtgaacggctgctgcgc
ggccctgctgatccgcatgacgtgctggaaattcaaggccgtcgcggtgtggaacagcac
ctcatcgacgaagtgcaggccgtgtaccgggcacagggtgtggcgattcacgacaagcac
atcgaaatcattatccgccagatgctgcggcgcggtaccgtcatcgaatccggttccacc
gagttcctgccgggcacgttggtcgatttggctgtcgctaagcaggccaatgcggaagcc
cgcaaggctggtttggagatcgccgagcttcgcagcgagatcatgggtatcaccaaggca
tcgctggcaaccgagtcgtggctgtcggcggcctccttccaggagaccacccgcgtgctt
accgatgcggcgattaaccgccgctcggatcagctcattggtctgaaggaaaacgtcatc
atcggtaagctgatcccagccggtactggtatctcccagtatcgcaacattatggtcaag
cccaccgagcgtgcccgcaacgcctcctacacggtgccatcgttcggtgactcggtctac
ggtgatgatttcacccacgacttcaccggggctgcggtgccgttggatgactacagctag
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