Candidiatus Paracoxiella cheracis: ACJMKR_04200
Help
Entry
ACJMKR_04200 CDS
T10945
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cchr Candidiatus Paracoxiella cheracis
Brite
KEGG Orthology (KO) [BR:
cchr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cchr03009
]
ACJMKR_04200 (rlmD)
Enzymes [BR:
cchr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACJMKR_04200 (rlmD)
Ribosome biogenesis [BR:
cchr03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACJMKR_04200 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRM5-TYW2_MTfase
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
PCMT
Cons_hypoth95
RrnaAD
TRAM
Methyltr_RsmB-F
PrmA
Methyltransf_11
DOT1
CMAS
Methyltransf_23
Methyltransf_4
Methyltransf_32
FtsJ
Methyltrans_SAM
Gp41_Mu
Motif
Other DBs
NCBI-ProteinID:
XQW91748
LinkDB
All DBs
Position
complement(788259..789587)
Genome browser
AA seq
442 aa
AA seq
DB search
MAHKRRKKCPTEHFTATVTTLSHDGRGIAHIDGKTTFLFGGLPEEAVEFQYQKIHSRYDE
GKVVNVTNASPDRTAPRCKHYGICGGCSLQHIKPEAQIQHKLKAFLELMQHAGCRPTELL
PPITGNPWGYRRKARLSIKFLHKKDKVLVGFRERNGRFVANLERCDILDPSIGEKISAFS
DVLYQLKIREQIPQIEIAVGDEKTAIIIRHLVNIESDDLNLLREFVTTHNLQLYLQPAGP
DSIHLDWPTQTNSLLNCTLPAYNLSLQFHPNQFIQVNQNINDKMIAQALELLTLTPTDRV
LDLYCGIGNFSLPIAKYCQKVIGVEGSSQSVQQATNNARLNHIDNAEFFCTDLSQPTYNK
NWAAHVFDKIVLDPPRTGAKEVIDSIPAWKAKRIVYISCNPATLARDAKLLQEKGYNLEK
AGVMDMFPHTQHVEAIALFIKK
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggcccataaacgacgcaaaaaatgcccaacagaacatttcaccgctaccgtgacgaca
ctgagtcacgatggccgcggcatcgctcacattgacgggaaaacaacgtttttgttcggg
ggattgcctgaagaagcagtggaatttcagtaccaaaaaatccatagccgctatgacgag
ggaaaagtggtcaacgtgactaacgcctcacctgatcgaaccgccccacgttgcaaacac
tatggcatttgcgggggctgcagtttgcaacacatcaaacccgaagcccaaattcaacat
aaattaaaagcgtttttagaattaatgcaacacgcaggctgtcggccaacagaattatta
ccgcccatcacaggaaatccctggggttatcggcgcaaagcacgactcagcattaaattc
ctccacaaaaaagataaagtcctcgtgggatttcgcgagcgaaacggtcgttttgtcgca
aatttagagcgttgtgacatattagatcccagcatcggtgaaaaaatttctgcgtttagc
gacgttctgtatcaattgaaaattcgagaacagattcctcaaatcgaaattgccgtgggt
gatgagaaaacagccattattataagacacctagtgaatatcgaatcggatgatctcaac
ctgctacgcgaatttgtaacaacgcataatttacagctttatttacagcctgcaggaccc
gatagcattcatttagattggcccacacaaacaaattctttattgaattgcacattaccc
gcctacaacctttcactacaatttcacccaaatcaattcattcaagtgaaccaaaatatc
aatgataaaatgatcgctcaagcactagaattactgacattaacacccactgatcgcgtg
ctggatttatattgcggcataggcaatttttcattgccaatcgcaaaatattgccaaaaa
gtgatcggcgtggaaggcagctcccaatcggttcaacaagcaacgaataatgcacgccta
aaccatatcgataatgccgaatttttctgcacggacttatcacaaccaacctataataaa
aattgggccgctcacgtttttgataaaatcgtgttggatccaccgagaactggcgccaaa
gaagtgatagactctatccctgcctggaaggctaaacgaattgtttatatatcctgtaat
cccgccacactggcgcgcgatgcaaaactattacaagaaaaaggctataatttagaaaaa
gccggcgtgatggacatgtttccacatacacagcacgtcgaagccatcgcccttttcatc
aaaaagtga
DBGET
integrated database retrieval system
