Candidiatus Paracoxiella cheracis: ACJMKR_04695
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Entry
ACJMKR_04695 CDS
T10945
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cchr Candidiatus Paracoxiella cheracis
Pathway
cchr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cchr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACJMKR_04695 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cchr03400
]
ACJMKR_04695 (mfd)
Enzymes [BR:
cchr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACJMKR_04695 (mfd)
DNA repair and recombination proteins [BR:
cchr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACJMKR_04695 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AAA_25
Motif
Other DBs
NCBI-ProteinID:
XQW92049
LinkDB
All DBs
Position
complement(890773..894231)
Genome browser
AA seq
1152 aa
AA seq
DB search
MSKVSPLQPPLPRNNDNELHWSGLSGSSASLVISNLVAQSQGLVLLVTPDMHSAARLKRE
LDFFSRGSDTTIIHFPDWETLPYDHFSPHQDIISERLLTLYRLPKLKNGIVIAALPTLMH
RLLPRQHLEANAFALAQGEAFHLDKIRDQLVQSGYRSVGQVMEHGEFAVRGAIIDIFPMG
SRVPYRIELFDDQVESIRSFEPETQRSIEKMEKIALLPAREYPLTEEAITHFRQTWREKF
SGNPQEAPLYQHISNAESAPGIEYYLPLFYDHTENVTDYLPANSQLILMGDTQTAVDHFW
EEIKFRYEQLRYDVTRPLCAPDELFLSPTQLFQHFKPFNQIKIHQETLPEKNGVAFDTAP
PPKLLVDHKAASPFSALEHYLKKYLEDASAKVLCCAESTGRREILLEQLKEIHISPSTFD
SWQAFLTHQGRIGITVAPIDHGLLLNSPKIALITESQLFGEQVMQRRLRKERKLDPSAMI
RNLTELHIGDPVVHINHGVGRYVGLQTIQTGDLEAEYLTLQYADNDKIYVPVSSLHLISR
YTGADADHAPLQKLGSKQWDKIKEKTAKRVRDVAAELLDIYGRREAAPGFAFKKPDKDYE
KFRSEFPFEETPDQHTAIQDVLHDMTRARSMDRLVCGDVGFGKTEVAMQAAFIAAQAGKQ
VAVLVPTTLLAEQHLHNFQDRFAQWPIKIAAMSRLRSAKQHDEIISALAAGKIDIVIGTH
KLLGESIRFKDLGLLIVDEEHRFGVRQKERIKSLRAHVDILTLTATPIPRTMNMALSGTR
DLSIIATPPARRLSVKTFVHEYNPALIREAMLRETMRGGQIYFLHNDVATINATAEKLHK
IIPEARIIVAHGQMRERELEQVMTDFYHQKYNVLVCTTIIESGIDIPTANTIIINRADRF
GLAQLHQLRGRVGRSHHQAYAYLLTPSQKALTRDAKKRLEAIAQLDELGVGFNLATHDLE
IRGAGELLGVEQSGHIHEVGFSLYLELLEEAVKALKAGQEPELDKPLHGGTEIDLGLTAL
LPASYVPDVHTRLTLYKRLTHCADKQAIADFKSEMIDRFGLLPEPAQHLFDMADIRLQAT
QLGIHKIEVGSNFGYIHFTAKPNIDVAKLARLVQQQPIQYQLQDNQKLRFIAPPKEAEKR
FMTLRSLLKSLI
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagtaagtccgttacaaccgccactaccgcgaaacaatgacaatgaactccat
tggagtggtttatccggtagcagtgctagcctagtcatcagcaacttggtagcacaaagc
caagggttggttttgctcgtcacccccgacatgcactcggctgcgcgcttgaaacgtgag
ctcgattttttttcacgaggctcagacacaaccatcatccattttcccgactgggaaacg
ttgccttatgatcatttttctccgcatcaagatattatttctgaacgattgctgacgctt
tatcgtttacccaaattaaaaaacggcatcgtcattgctgctttgcccacactcatgcat
cgattgttgccacgccaacatttagaagcaaatgcttttgcgttagcgcaaggtgaagca
tttcatctcgataaaattcgcgatcagctcgttcaaagcggttatcgctcagttggccag
gtgatggagcacggtgaatttgcggtgcgcggcgccatcatcgatatttttccgatgggc
agccgagtgccctatcgtattgaattattcgatgatcaagtggaaagcattcgtagcttc
gagcccgaaacgcaacgctctatcgaaaaaatggaaaaaatcgccttattgccggcacga
gagtatccgctaaccgaagaggcgatcactcatttccgacaaacttggcgcgaaaaattc
tcaggcaacccacaagaagcaccgctttaccaacatattagcaacgccgaatctgccccg
ggcatcgaatattatttgccacttttttatgatcacacagaaaacgttaccgattattta
ccggctaacagccagttaatattaatgggcgacacccaaacggccgtcgatcatttttgg
gaagaaataaaatttcgctacgaacaattacgctacgatgtgactcgacctttatgcgca
ccggatgaattatttctttcacccacgcaactatttcaacattttaaaccgtttaatcaa
attaaaattcatcaagaaactttacccgaaaaaaatggtgttgcttttgatactgcacca
ccccccaaactgttagtcgaccacaaagcagcttcacctttttccgccttagagcattac
ttaaaaaaatatctcgaagatgcaagtgcaaaagttttatgctgcgcagaaagtacaggc
cggcgtgaaattttgctcgaacaactgaaagaaattcatatttctccttcaacgttcgat
agctggcaggcttttttaacgcatcaaggtcgcatcggcattacagtcgcgcccattgat
cacggcttattattgaattcccctaaaattgctctcattaccgagtcgcaattatttggc
gaacaagtcatgcaacgtcgcttgcgaaaagaacgcaaactcgatccgagtgctatgata
cgcaatctgaccgaattacatattggcgatccggtggttcacattaatcacggtgtcggc
cgctacgtgggattacaaaccattcaaacaggcgaccttgaagcagaatatttgacgctg
caatatgctgataacgataaaatttatgtacccgtttcttcattacacctcattagtcgc
tacaccggcgccgatgcagaccacgcaccactgcaaaaattaggtagcaagcagtgggat
aaaattaaagaaaaaacggcaaagcgtgttcgcgatgtggcggcagaattgctcgatatt
tatggtcgccgcgaagcagcaccgggttttgcatttaaaaaaccagacaaagattatgaa
aaattccgcagtgagtttccttttgaagaaacaccggatcaacacaccgcgattcaagac
gtgttgcacgatatgacgcgcgctcgcagcatggatcgattggtgtgcggcgatgtgggt
tttggtaaaacagaagttgcgatgcaagccgcttttattgccgcacaagctggcaaacaa
gttgcggtattagtgccaacaactttgttggccgaacagcatttgcataattttcaagat
cgctttgcacaatggcccattaaaattgccgctatgtcgcgactgcgttctgctaagcaa
cacgatgaaatcatcagcgcactggctgctggcaaaatcgatattgttatcggcacacat
aaattactcggcgagagcattcgctttaaagatttaggcttgttgattgtcgatgaggaa
catcgttttggtgtacgccaaaaagagcggattaaatcattacgcgcacatgtcgatatt
ctcacgctaacagcaacaccaatccctcgcacaatgaacatggccttatcgggaaccaga
gatttatccatcattgcaacaccacccgcacgacgcttgtcggtaaaaacatttgtgcat
gaatataatcccgctcttattcgcgaagcgatgttgcgcgaaacaatgcgcggaggccaa
atttattttttacacaacgacgttgctaccattaatgcaaccgcagaaaaactacataaa
attatacccgaagcaagaattatcgttgcccatggacaaatgcgagaacgtgaactcgaa
caagtcatgacagatttctatcaccaaaaatataacgttttagtatgtacaaccattatt
gagtcaggcatcgatattccgactgcaaataccatcattattaatcgtgctgatcgtttc
ggccttgcacaactgcatcaattgcgtggtcgtgtcgggcgttcacaccatcaggcctac
gcctatttactcactccttcacaaaaagcattaacgcgtgatgctaaaaaacgactcgaa
gccattgcgcaattagatgaactcggcgtcgggtttaatcttgccactcacgatttagaa
attcgcggcgctggtgagttattgggtgttgagcaaagcggtcatattcacgaagtgggt
ttttcgttgtatcttgaattattagaagaagcggtaaaagcattaaaagcgggtcaagag
cccgaattagataaacccttacacggcggcacggaaattgatttgggtttaacggcacta
ttaccggcatcctacgttcccgatgtacatacccgtttgacactttacaaaagattaacc
cattgcgccgacaaacaagccattgccgattttaaatcagaaatgattgaccgttttggt
ttattgccagaacccgcgcaacatttgtttgacatggccgacattcgcctacaagcaacc
caattaggcattcataaaattgaagtgggcagcaactttggctatatccatttcacagca
aaacctaatattgatgtcgctaaattagcacgattagtgcagcaacagccgattcaatat
caattacaagacaaccaaaaacttcgcttcatcgcacctcctaaagaggctgagaaacgc
ttcatgacattacgcagtctattaaaaagtttgatttaa
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