Candidiatus Paracoxiella cheracis: ACJMKR_05305
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Entry
ACJMKR_05305 CDS
T10945
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cchr Candidiatus Paracoxiella cheracis
Pathway
cchr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cchr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACJMKR_05305 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cchr03019
]
ACJMKR_05305 (rnr)
03016 Transfer RNA biogenesis [BR:
cchr03016
]
ACJMKR_05305 (rnr)
Enzymes [BR:
cchr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACJMKR_05305 (rnr)
Messenger RNA biogenesis [BR:
cchr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACJMKR_05305 (rnr)
Transfer RNA biogenesis [BR:
cchr03016
]
Prokaryotic type
tRNA degradation factors
ACJMKR_05305 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
RNase_II_C_S1
WHD_RNase_R
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
XQW91947
LinkDB
All DBs
Position
1026885..1029083
Genome browser
AA seq
732 aa
AA seq
DB search
MVKSYRKKDPHLTREAGLYEHPVPSREFILQYLEEVARPVTFRHLLDAFDLQKPEEKEGL
RRRLNAMERDGQCMSNRRGSYALVKKMDLVSGVVQGHRDGFGFLIPDDGNSDIFLPAREM
RSVFSDDVVLVRIINPKDRRPEGSIVEVLEHNTHQIVGRYYEEEGIAFVDPDNKSISQDI
VVPKDQQANAKHGQFVVIEITSQPTKRRHAMGRVIEVLGDHLTPGMEVQLAIRSYEIPFK
WPDDVLGEAKKFPAELLVTDKKDREDLRQLPFVTIDGEDAKDFDDAVFCEPVKTGGWNLY
VAIADVSHYVRIDSALDSEARERGNSVYFPAKVIPMLPETLSNNLCSLKPNVDRLAITCR
MRIDEEGHVRSHRFTESIIHSHARLTYSEVAAMLDGKQTKHQKLLPHMKEFHRLYKKLQK
QRVVRGAIEFETLETRIEFDKKGKIKRIVPSVRNVAHRMIEEAMLAANVSTAQWLEKENI
PILYRIHEGPEEQKLLALRDFLKAFGLRLTGGNKPTSMDYAKLLTRVEKRPDAHLLQTVM
LRSLRQAMYFPENVGHFGLSYEGYCHFTSPIRRYPDLLVHRALKHILHRRAVKKFHYDEK
MMIELGEHCSMTERRADRATRDADDWLKCEFMLDKIGQEFNGRIVEVTGFGVFVELDQIY
VQGLLHITSLQNDYYHHDPTHHLLRGKRSGKIYRLGDPIRVLVSKVDLDQRKIDFELAGE
LSPRKKTQESDK
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
gtggttaaaagttaccgtaaaaaagatcctcacctcactagggaagcaggcctatacgag
caccctgtgcccagccgtgaatttattcttcaatacctcgaagaagttgctcgacccgtt
acatttcggcacttgctggatgcgtttgatttacaaaaacctgaagaaaaagaagggttg
cgtcgacgactcaatgcgatggagcgtgatggtcaatgcatgagtaatcgccgtggcagt
tatgcgctggttaaaaaaatggatttagtgagtggcgtcgtccaaggacatcgtgatggg
tttggatttttaatacccgatgatggcaacagcgatatctttttaccggcgcgcgaaatg
cgttccgtattttctgatgatgttgtgcttgtgcgcattattaatccgaaagacagacgc
ccagaaggtagcatcgttgaagtgctggaacacaatacgcatcaaattgtcggccgctat
tatgaggaagaaggtattgcatttgtggaccccgataataaatcaatttcacaagatatt
gttgtgccgaaagaccaacaagctaatgcgaaacatgggcaattcgttgtcattgaaatt
acctcgcaacccacaaaacgtcgtcatgccatggggcgtgtgattgaagtactcggcgat
cacttgacgccgggcatggaagtgcagcttgctattcgatcttatgagattccttttaaa
tggccagatgatgtcttgggtgaagctaaaaaatttcctgctgaattacttgtcaccgat
aaaaaagatcgtgaagacttacgtcaattgccttttgtgacgattgatggtgaagacgca
aaagactttgacgatgctgttttttgtgaacctgtaaaaacaggtggctggaatctctac
gtagctattgcggatgtgtcgcactatgtgagaattgatagtgcgcttgatagcgaagcg
cgtgaacgtggtaattccgtttattttccggcaaaagtcattcccatgttgccggaaaca
ttatccaataatttatgttcattgaagcccaacgtggatcgcttagccattacttgtcga
atgcgcattgatgaggaaggtcatgtgagaagtcatcgttttactgaatctattattcac
tcgcatgcgcgattaacgtattccgaagtggcggcgatgttagatggtaaacaaaccaaa
catcaaaaactattgccacacatgaaagaatttcatcggctttataaaaaattacaaaag
caacgtgttgttcgcggtgccattgaatttgaaaccttagaaacgcgaattgaatttgat
aaaaaagggaaaattaaacgaattgttccttccgtgcgtaatgtggcgcatcgcatgatt
gaagaagcgatgttggccgccaacgtcagtacagcccaatggctagaaaaagaaaatatt
cccattttataccgcattcatgaaggacccgaagaacaaaaattgttagccttgcgtgat
tttctaaaagcgttcgggttacgtttgacaggtggcaataagccaacttcgatggattat
gcaaaactcttaacgcgagttgagaaacgtccggatgcacacttgttgcagacggtgatg
ctgcgctcattgcgtcaagcgatgtattttcctgaaaacgtcggacactttggtttgtcg
tatgaaggctattgtcactttacttcacccattcggcgttatccggatttattagtgcat
cgtgcgttgaaacacatcttgcatcgcagggctgtgaaaaaatttcattacgatgaaaaa
atgatgatagaactcggtgagcactgttccatgaccgaacggcgagctgatcgtgccact
cgagatgccgatgactggttaaagtgcgagttcatgctcgataaaatcggacaagaattt
aatggacggattgtagaagtgactggctttggggtgttcgttgagttagatcaaatttat
gtgcagggattattgcacataacttccctgcaaaatgattattaccatcatgatcctacc
caccatttattgcgtggaaaacggagtggcaaaatttatcgtttgggtgatcccattcga
gtgcttgtttctaaagtcgacctcgatcaacggaagatcgattttgagctggcgggggaa
ctctcgcctcgaaaaaagacgcaagaatctgataaataa
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