Clostridium chauvoei: BTM20_00720
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Entry
BTM20_00720 CDS
T05083
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cchv
Clostridium chauvoei
Pathway
cchv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cchv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BTM20_00720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cchv03400
]
BTM20_00720
Enzymes [BR:
cchv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BTM20_00720
DNA repair and recombination proteins [BR:
cchv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BTM20_00720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ATD53871
UniProt:
A0ABD4RH54
LinkDB
All DBs
Position
161736..165248
Genome browser
AA seq
1170 aa
AA seq
DB search
MRLKGVMEPLNNSSHFDEILTNINQNKYPINIYGLSDSGKSYAIEGIYENIDTPLVILTH
SDMEAKNLYEDLIFYTNDVYYFPNKEVVFYNIDAISGDLRWARLKVIKEMLNNKKKIIIT
SIDSFATIYTPKKLFKKYTFKLKIDQEVDFKDLSMKLLEGGYERVEIVEGKGEFSLRGGI
LDVFPPTSAYPFRVELFGDQIDSIRTFNTDSQRSIEKVKSLEIFPAKEIIITEEGLDLAK
KRMKEEFEEINQKSGNKDKERISRLQDIVNKNIESLSETLTFETVESYLPYFYKEKEDLF
EYLKGYTYIIDDVKRCIGKVDSTYYEFRENYESFLQRGGILPGQNELLITKETLIEKVQD
QNSITLDTFVSKNEILKPLATVGINQVTLNNYQGQLDLLIEEIQNKKLNGYKILILSGTR
SRGERLVSTLRDRGIESSYKDDVSSIQFGEVVITFGNLLKGFEYPDIKLCVISDKEVFGE
AKRKTAKKIKPKKGIAKIKSFAELKPGDYVVHANHGVGVYKGIKQIESLGSTRDYLDIIY
DKGDKLYVPVDQLDLVQKYIGSEGKSPKVNKLGGSEWTKAKAKVRKSINEIAQDLVKLYA
ARATVKGYKFGKDTQWQGQFEDEFPFEETPDQLTSVEEIKKDMESDKPMDRLLCGDVGYG
KTEVAVRAAFKAVMDGKQVAFLVPTTILAEQHYKNMIKRFSDFPVNIDMVSRFRTAKQQK
ATLQAVKEGNVDILIGTHRLVSKDIVFKDLGLLIIDEEQRFGVAQKEKIKGLKKNVDVLT
LSATPIPRTLHMSLTGARDISVIETPPEERYPIQTYVVENNEELVRDAILREVNRGGQVY
YVYNRVETIQDMASYLRDLVPECKVGIIHGQMTERQLEKEMVSFMNKEYDILVCTTIIET
GIDIPNVNTMIIHDSDKMGLSQLYQLRGRVGRSNRIAYAYFIYTKDKVLTEVAEKRLKAL
KDFTELGSGFKIAMRDLEIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDTIKIIKGEIDKE
PVETTVDIKVDAYIPGTYIEDEIQKIEIYKKIAAIDNIEDYMDIKEELQDRYSGIPDAVQ
NLMDIAYIKSKAKLLSIQEIKEMPKEVRFKFADGFKDINKIYKLLLKDYKDKVFLMFGEN
PYFSIKPNEIKKEQILEFYKEMLDNLIKNM
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgagattaaagggggtaatggaacccttaaataatagttctcattttgatgagatatta
actaatataaatcaaaataaatatccaattaatatatatgggttatcagactcaggtaaa
agttatgcgattgagggaatctatgaaaatatagataccccactagtgattttgactcat
agtgatatggaagctaaaaatctatatgaagatttaattttttatacaaatgatgtttat
tattttccaaataaagaagttgttttttataatatagatgcaatttcaggggatttaaga
tgggctagattaaaagtaataaaagaaatgttaaataataaaaagaaaataataataact
tctatagattcatttgctacaatctatacaccaaaaaagttgtttaaaaaatatactttt
aaacttaagatagatcaagaggttgattttaaagacctatctatgaagcttttagaaggt
ggatatgaaagggtagaaatagtagagggaaaaggtgagttttctttaagagggggaata
ctagatgttttccctcctacttcagcgtacccatttagagtagagctttttggagatcaa
atagattcaataagaactttcaatacagactctcaaaggagtattgaaaaagtaaaaagc
ttagaaatattcccggctaaggaaataataataacagaagaaggattagacttagctaaa
aaaagaatgaaagaagaatttgaagagataaatcaaaagtcaggaaacaaagataaagag
cgaatatcaagattacaagatatagtaaataaaaatattgaaagtttatcagagacacta
acttttgaaactgtagagagttacttaccttatttctataaggaaaaggaagatttattt
gaatatttaaaaggatacacttatataatagatgatgttaaaagatgtataggaaaagtt
gatagcacttactatgaatttagagaaaactatgagtcttttttacaaagaggtggaatt
cttccagggcaaaatgagttattgataacaaaggaaactttaattgaaaaagtacaagat
caaaactcaataacattagatacttttgtaagtaagaatgaaatattaaaaccattagct
acagtaggaataaatcaagtaaccttaaataattatcaaggacagctagatttattaata
gaagaaattcaaaataaaaaattaaatggctataaaatattaatcctatcaggaactaga
agtagaggagaaagattagtttctacgcttagagatagaggaatagaaagttcatataaa
gatgatgtatcatcaatacaatttggtgaagtagtaattacatttggaaaccttttaaag
ggttttgaatatccagatataaaattatgtgtgatttcagataaagaagtatttggagaa
gcaaaaagaaaaacagccaaaaagataaaacctaaaaagggtatagctaaaattaagagc
tttgcagaacttaagcctggtgattatgttgttcatgctaaccatggggtaggtgtctat
aagggcataaaacaaatagaatctttaggtagtactagggattacttagatataatttac
gataagggagataaattatatgttcctgtagatcaattggatttagtccaaaaatatata
ggaagcgaaggaaaaagcccaaaagtaaataaattaggtggaagtgaatggactaaggct
aaagctaaagttagaaagtcaataaatgaaatagcccaagacttagttaagctttatgca
gcgagagctactgttaaaggatataaatttggtaaggatactcagtggcaagggcaattt
gaagacgagtttccatttgaagaaacaccagatcaattaacatcagtagaagagataaaa
aaagatatggaatctgataagccgatggacagacttttatgtggagatgttggatacgga
aaaacagaagtagcagtaagagcagcttttaaagcagtaatggatggaaagcaagttgca
tttttagttccaacaacaatattagctgaacaacattataaaaatatgataaaaagattt
tcagactttccagtaaatattgatatggttagtagatttagaactgctaaacaacaaaaa
gcaacacttcaagcagttaaagaaggaaatgtggatatattaataggaacccatagatta
gtttctaaagatattgtatttaaggatttaggacttcttattatagatgaagaacaaaga
tttggagtagctcaaaaagaaaaaataaagggcttaaagaaaaatgttgatgttcttacg
ttaagtgcaacacctataccaagaactcttcatatgtcattaactggggcaagggatatt
tcagtaatagaaactcctccagaagaaagatacccaatacaaacttatgttgtagaaaat
aatgaggaattggttagagatgccatactaagagaagtgaatagaggaggccaagtttat
tatgtatataacagagtagaaactattcaagatatggcgagttatcttagagatttagtt
cctgaatgtaaagtaggtataatccatgggcaaatgactgaaagacagttagaaaaagaa
atggtaagctttatgaataaggaatatgacatattggtatgtacaacaataatagaaaca
ggaattgatattccaaatgtaaatactatgataatacatgattctgataaaatgggatta
tcacagttatatcaattaagaggtagagtaggtagatctaatagaatagcctatgcatat
tttatatatacaaaagataaagtattaactgaagttgcagaaaaaagattaaaggcttta
aaagattttacagagcttggatcaggatttaaaattgcaatgagagatttagagataaga
ggtgcaggaaatatgatgggatctgcacaacatggtcatatggcagctataggatatgat
ttatactgtagaatgttagaagatacaatcaagataataaaaggtgaaatagataaagaa
ccagttgaaacaacagttgatataaaagtagatgcatatataccaggaacatatatagaa
gatgagatacaaaaaatagaaatatataagaagattgcagccatagataatatagaagat
tatatggatataaaggaagagttacaagatagatattctggtattccagatgctgttcaa
aatcttatggatatagcttatataaaaagtaaagctaagttattatcaatacaagagata
aaagaaatgccaaaagaagtaagatttaaatttgcagatggtttcaaggatattaataaa
atatataaattattattaaaagattataaagataaggtatttcttatgtttggagagaat
ccatatttctcaataaaaccaaatgagataaaaaaagagcagatattagagttctataaa
gaaatgttagataatttaataaaaaatatgtaa
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