Clostridium chauvoei: BTM20_01130
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Entry
BTM20_01130 CDS
T05083
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cchv
Clostridium chauvoei
Pathway
cchv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cchv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BTM20_01130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cchv03021
]
BTM20_01130
03400 DNA repair and recombination proteins [BR:
cchv03400
]
BTM20_01130
Enzymes [BR:
cchv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BTM20_01130
Transcription machinery [BR:
cchv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BTM20_01130
DNA repair and recombination proteins [BR:
cchv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BTM20_01130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ATD53931
LinkDB
All DBs
Position
235720..239253
Genome browser
AA seq
1177 aa
AA seq
DB search
MFELNNFDAIQIGLASPGQIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPIKDWEC
HCGKYKRVRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLMDM
SPRALEKVLYFASYIVIDPKETPLLKKQLLNEKEYREAVDKYGDESFVAGMGAEAIQELL
GEIDLEGQSRDLKEELKTSTGQKKVRIIRRLEVVESFRKSGNDPKWMIINVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMALELFKPFVMKKLVEDGVAHNIKSAKRMVERVNNQVWDILEEVIADHPVLLNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLAAGNI
MKPSDGKPVCVPTQDMVLGSYYLTMDKDAAKGEGKIFSSKDEAIMAYEVGEIAIHAQIGV
RMFKEFDGELKSGIIKTTVGKVIFNESIPQDLGFVDRTKDDEKFNLEVDFLITKKSLGTL
IDKCYAVHGPTNTSIMLDKIKALGYHYSSIGAVTVAASDMIVPDAKYDLLKEADETVSKI
EKMYKRGFISEHERYERVIEKWTKTTEEVADALMNSLDKFNPIFMMADSGARGSKSQIKQ
LAGMRGLMASPTGKIIELPIRASFREGLEVLEYFISTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVREIDCGTKEGIYVSEIKEGNEAIEGLAERLHGRYTVEEILHPETGEVMVP
ADEYITLDMAEKVAATGIKKVKIRSVFTCNCKVGVCSKCYGMNMATAQKINIGEAVGIIA
AQSIGEPGTQLTMRTFHTGGVVGADITQGLPRVEELFEARKPKGLAIVSEITGNVRIEET
KKKRTVFVMGADGEERSYEIPFGSRLKVVDGDEIEAGDEITEGSVNPHDIMAIKGVDGAR
RYLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKVKVSDSGDTELLPGTMIDMFDFNEENA
RVREFGGEEAKGEMALLGITKAALATDSFLSAASFQETTRVLTEAAIKGKVDPLIGLKEN
VIIGKLIPAGTGMMKYRSVKLDVEDVEVEEEVLNITE
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattgaataattttgacgctatccaaatagggcttgcttcacctggccaaatt
agagaatggtcaagaggagaagttaagaaaccggaaactataaattatagaactttaaaa
ccagaaagagatggtctattctgcgaaagaatatttggacctataaaagactgggaatgt
cattgtggaaaatataaaagagttagatataagggcatagtttgtgacagatgtggagtt
gaagttacaaaagccaaagtaagaagagaaagaatggggcacattgaattagctgcccct
gtatctcacatttggtacttcaaaggtattccatcaagaatgggattacttatggatatg
tcaccaagagctttagaaaaagtattatactttgcatcttatatagtaattgaccctaaa
gaaacaccattattaaagaaacaacttttaaatgaaaaagaatatagagaagctgtagat
aaatatggtgatgaaagctttgttgctggaatgggagcagaagctattcaagaattactt
ggagaaatcgacttagaaggtcaatcaagagatcttaaagaagaattaaaaacaagtaca
ggtcaaaagaaagtaagaattataagaagactagaagttgttgagtcatttagaaaatca
gggaatgatccaaaatggatgattataaatgtaatacctgtaattccaccagatttaaga
cctatggttcaattagatgggggaagatttgcaacatctgacttaaatgacttatataga
agagttataaacagaaataatagattaaagaagcttttagatttaggagctcctgatata
atcgttagaaatgaaaagagaatgttacaagaagcagtagatgcgcttattgataacggt
agaagaggaagacctgtaacaggtcctggaaacagacctctaaaatctctttcagatatg
cttaaaggtaagcaaggaagattcagacaaaacttacttggtaagagagttgactactca
ggtagatcagttatcgttgttggtccagagttaaaaatgtaccaatgtggtcttccaaaa
gaaatggctttagaactatttaagccttttgtaatgaaaaagttagtagaagatggtgta
gcacataatattaagagtgctaagagaatggttgaaagagtaaataatcaagtatgggat
atacttgaagaagttattgcggatcatccagttttattaaaccgtgcacctactctacac
agacttggtattcaagctttccaaccagtacttgttgaaggtagagcaatcaaactacat
ccattagtatgtacagcatataatgccgatttcgatggagaccaaatggctgttcacgta
cctttatcagtagaagctcaagcagaagcgagattcttaatgcttgcggcaggaaatata
atgaaaccttcagatggtaagccagtttgtgtacctacacaagatatggttttaggttca
tattatctaacaatggataaggatgcagctaaaggagaaggtaaaatattctcatcaaaa
gatgaagctattatggcctatgaagtaggtgaaatagcaattcatgcgcaaataggcgta
agaatgttcaaagaatttgatggagaacttaaatctggaataataaaaactacagtaggt
aaagttatctttaatgaatctattccacaagacttaggatttgtagatagaactaaagat
gatgaaaagtttaacttagaagttgatttcttaataactaagaaatctttaggtacactt
atagataaatgttatgcagttcatggaccaactaatacatctattatgctagacaagatt
aaagcgttaggttaccattattcatcaattggagcggttacagtagcggcttcagatatg
atagtaccagatgctaagtatgatttacttaaagaagctgatgaaactgttagcaaaatt
gaaaagatgtataagagaggtttcatatctgaacatgaaagatatgaaagagttatagaa
aaatggactaaaacaactgaagaagttgctgatgccttaatgaatagtttggataagttt
aacccaatatttatgatggcggactcaggagccagaggttctaagtcacaaattaagcaa
ttagcaggtatgagaggacttatggcaagtcctacaggtaagattatcgaattaccaatt
agagcatcatttagagaaggtcttgaagttttagagtacttcatatctactcatggagct
agaaaaggtaatgccgatactgctcttaaaactgccgattcaggatatctaacaagaaga
cttgttgatgtatcacaagatgttatcgtaagagaaattgattgtggtacaaaagaaggt
atatatgtatcagaaatcaaagaaggaaatgaagcaattgaaggattagcagaaagactt
catggtagatacacagttgaagagatacttcatccagaaacaggagaagttatggttcca
gctgatgaatatataactttagatatggcagaaaaggtagctgctacaggaattaaaaaa
gttaaaattagatcagtatttacatgtaactgtaaggttggagtttgttcaaaatgttac
ggtatgaacatggctactgctcaaaagataaatataggtgaagctgttggtataatagct
gcacaatctatcggggaaccaggaactcagcttacaatgagaacattccatacaggtgga
gttgttggagccgatatcactcagggtcttcctagagttgaagaattatttgaagctaga
aaacctaaggggttagctatagtaagtgaaataactggtaatgtaagaatagaagaaact
aagaagaagagaactgtatttgtaatgggtgcagatggtgaagaacgtagttacgaaata
ccatttggatctagattaaaagttgttgatggtgatgaaatagaagctggagatgaaatc
acagaaggttcagtaaaccctcatgatatcatggctataaaaggtgttgacggagctaga
agatacttactttcagaagtacaaaaagtttatagacttcaaggtgttgatattaatgat
aaacatttagaagttgttgttagacaaatgactagaaaggttaaagtatctgattcagga
gatactgaattattaccaggaacaatgatagatatgttcgactttaatgaggaaaatgca
agagtaagagaatttggtggagaagaagctaagggtgaaatggccttactaggtattact
aaagctgctttagcaacagatagtttcttatcagctgcatcattccaagaaacaacaaga
gttcttactgaagctgctataaagggaaaagttgatccattaataggattaaaggaaaat
gtaattattggtaaacttattccagcaggaacaggtatgatgaaatatagatcagtaaaa
ttagacgttgaagatgttgaagtagaagaagaagtattaaatataacagaataa
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