Clostridium chauvoei: BTM20_13080
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Entry
BTM20_13080 CDS
T05083
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cchv
Clostridium chauvoei
Pathway
cchv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cchv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTM20_13080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cchv03019
]
BTM20_13080
03009 Ribosome biogenesis [BR:
cchv03009
]
BTM20_13080
Enzymes [BR:
cchv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BTM20_13080
Messenger RNA biogenesis [BR:
cchv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BTM20_13080
Ribosome biogenesis [BR:
cchv03009
]
Prokaryotic type
rRNA helicases
BTM20_13080
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Helicase_RecD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ATD56081
LinkDB
All DBs
Position
2816593..2818170
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AA seq
525 aa
AA seq
DB search
MKEINFSDLGLKDTLLKSINELGFEKPSQIQSQAIPVAIEGNDLIGQAQTGTGKTAAFGC
GIINSIDCKEGLSAIILAPTRELAIQVNDELTRLSKYDHLNILPIYGGEPINHQIRALKR
NVNIVVGTPGRILDHIKRKTLSLSKVKFLVLDEADEMLNMGFIDDLEDIIKELPEDRQTL
LFSATMPPQIKRLAKRYMKADAKHIAIEKSAMTVSKIKQHFFEIAPKTRFEALCRILDFD
NPNSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLRKFKDGSLNFLIATD
VAARGIDVEGVTHVINYDLPQDVESYVHRIGRTGRANREGTAYSLISPKEFSMLKQIKSV
TKGTITKKSVPTVDEIFSNKSQTMIDDVDATLKKADFDKFIPVAVELNKKYDSVEIIAAL
IKSKFNDDLLSTYTSNILEAPKSEDVRLFFSVGRRDGINPKSLVNFIKDSARIKASSIGD
IDILENFAFVNVSPDVKDKVMDKCIGLKLNKRKINIEVANKKKRR
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaattaattttagtgacttagggcttaaagatacccttttaaaatctattaat
gaattaggttttgaaaaaccatctcaaatacaatcacaagctattcctgtagcaatagaa
ggtaatgatcttataggtcaagctcaaactggtactggtaagacagctgcatttggttgt
ggaataattaatagtattgactgtaaagaaggacttagtgctataattcttgctccaaca
agagaattagcaattcaagttaatgacgaacttacaagattatcaaaatatgatcattta
aatattttacctatttatggtggagaacctataaatcatcaaataagagcacttaagaga
aatgttaatattgttgttggtactcctggtagaatcttagaccatattaaaagaaaaaca
ctttctctatcaaaagttaagtttttagttttagatgaagcagatgaaatgttaaacatg
ggctttatagatgatttagaagatataataaaggaacttccagaggacagacaaacttta
ttattctctgctacaatgcctccacaaattaaaagattagctaagcgttatatgaaggct
gatgctaaacatatagctattgaaaagtcagctatgacagtttcaaaaataaagcaacac
ttctttgaaatagctccaaaaacaagatttgaagcgctttgtagaatacttgatttcgat
aatccaaattctgctataatattctgtagaacaaaaaaaggcgtagatgaattagttgaa
ggtatgcaatcaagaggatatgttgttgaaggtatgcacggagatatgtcacaagctcac
agattaagaactttaagaaaatttaaagatggttcattaaacttcttaatagctacagat
gttgctgctagaggtatagacgttgaaggtgttactcacgttataaactatgatttacca
caagacgttgaaagttatgttcatagaataggtagaactggtagagctaatagagaaggt
actgcttactcattaatatcaccaaaagaattttcaatgttaaagcaaataaaatcagtt
actaagggtactattactaaaaaatcagttcctacagtagatgaaatcttctcaaataaa
tcacaaacaatgattgatgatgttgatgctacattaaagaaagctgattttgataaattt
ataccagttgctgttgaattaaacaagaaatatgattcagtagaaataatcgctgcactt
ataaagagtaagtttaatgatgatttattatctacttatacatcaaatattttagaagct
ccaaagagtgaagatgttcgtttattcttctcagttggtagaagagatggtataaatcca
aaatctttagttaactttataaaggattcagctagaataaaagcttcttctataggtgat
atagacatattagaaaactttgcttttgttaatgtttctcctgatgttaaagataaggtt
atggacaaatgtattggacttaaactaaacaagagaaaaataaacatagaagttgctaac
aaaaagaaaagaagataa
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