Coprinopsis cinerea (gray shag): CC1G_01067 Help Entry CC1G_01067        CDS       T01275                                  Name (RefSeq) ATP dependent helicase   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism cci  Coprinopsis cinerea (gray shag) Pathway cci03013   Nucleocytoplasmic transport cci03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:cci00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     CC1G_01067    03015 mRNA surveillance pathway     CC1G_01067  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cci03019]     CC1G_01067 Enzymes [BR:cci01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      CC1G_01067     5.6.2.5  RNA 5'-3' helicase      CC1G_01067 Messenger RNA biogenesis [BR:cci03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      CC1G_01067    mRNA cycle factors     Common to processing body (P body) and stress granule      CC1G_01067 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII UvrD-helicase SLFN-g3_helicase Viral_helicase1 DEAD NPHP3_N Helicase_RecD AAA_22 nSTAND3 PIF1 AAA_16 SRP54 ATPase PhoH Ribosomal_S27e AAA_25 AAA_10 UvrD_C_2 Motif Other DBs NCBI-GeneID:  6009496 NCBI-ProteinID:  XP_001833005 UniProt:  A8NEE6 LinkDB All DBs Position 2 AA seq 1079 aa AA seqDB search MDTFDNFQYDNGSSYGGMSVVDDTSSVYTANTQDNVSVDLSNLSLSEYNPSSSGNGHAGH SHVSPKNQQGTGLDEDFDAVLDDLKDEAEVDLPPHACSYCGIHSPASVVKCLICSKWFCN SRGNTSASHIVNHLVRAKHKEVILHAESPLGETTPECYNCGSKNVFMLGFIPAKSDTVVV LLCRQPCAAISKDISWNASLWAPLIDDRSFLSWLVKPPSEQEQLRSRQISFNQINRLEDL WRENANATLEDLEKPGVDDEPQPILLRYEDAYQYQNIFGPLVKIEADYDKKLKESQTQTD ITVRWDLGLNQKRVAWFCLPKLESGEVRLAVGDELRLRYQGELHKAWEGVGHVIKIPNNV SDEIGLELRRSDGVPSECTHNFAADFVWKSTSFDRMQLAMKTFAVDEKSVSGYIYHKLLG HEVEAQSLRTQMPKRFSAPGLPELNHSQMYAVKSVLQKPLSLIQGPPGTGKTVTSASIVY HLAKMNPGQVLVCAPSNVAVDQLTEKIHATGLKVVRLTAKSREALDSSVNFLTLHQQVAN STTHIELQKLIQLKNEQGELSSNDERKYKTLIRQCEKEILGAADVICCTCVGAGDPRLSK LRFRTVLIDEATQAAEPECMIPLVLGCKQVVMVGDHQQLGPVIMNKKAARAGLTQSLFER LVLLGNRPIRLQVQYRMHPCLSEFPSNMFYEGSLQNGVTAPERLRKNVDFPWPVPDTPMF FYQNLGQEEISSSGTSFLNRTEASNVEKIVTKFFKSGVVPNQIGVVTPYEGQRSYIVNYM QFNGSLKKDLYKEIEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRAK YGVVILGNPKVLSKHPLWHYLLTHYKESNVLVEGPLNNLQPSMIQFSKPRRSLVKSMEQF RRHETVARDYLPSNSGMPVDPMSRRSGTPSRFDASFYRTHDAMGYIPSDVQSLRSQATYS SGLPMFGAPGPFSAGIPRGVNGGKRSTYSYASSIVSQDAGPSVTDNSSVVGGGSVHSSNL AYSQSDRLRRRGSFGSSSVTGQSDLGSMIGYDYKSQDDGGDMDDMKSQYTGTQSGVTVF NT seq 3240 nt NT seq  +upstreamnt  +downstreamnt atggatacttttgacaatttccagtacgacaatggctcgtcgtacggcggcatgagcgtc gtcgatgacacgtcgtctgtatacaccgccaacactcaagataatgtctcggtcgactta tccaatctctccctatccgaatacaacccaagctcgtcaggaaacggacacgcgggtcat agccatgtttcccccaagaaccaacagggaaccggcctagatgaagattttgacgcagta ttagatgatctcaaagacgaggctgaggttgatctccctcctcatgcttgcagctattgc ggcattcactcgcctgcatcggtcgtcaaatgcctgatttgctccaagtggttctgcaac tcacgtggaaacacatctgcctcccacatcgtcaaccatcttgttcgcgcgaagcacaag gaggtcattttgcacgctgaaagtccacttggcgaaactacgcccgagtgctacaactgt ggaagcaagaatgtcttcatgttgggtttcatccccgctaaaagcgacaccgtcgttgta cttttgtgcagacaaccctgtgccgccatttccaaagatatttcgtggaatgcatcgctt tgggcgcctttgattgacgatagatcattcctctcttggctcgttaagccgcccagtgaa caagagcagctccgttctcgccaaatttcgttcaatcagatcaaccgcctcgaggatctc tggagggagaacgcaaacgctacccttgaagatctcgaaaagcctggcgtggacgatgaa ccccagcccatcttgttgcgctacgaggatgcgtaccagtaccaaaacatctttggcccc ctcgtcaaaatcgaagctgactatgacaagaaattgaaggagagccagacgcagacggat atcacggttagatgggatttgggtttgaaccagaagcgtgtcgcttggttctgtttgccc aagctggagagtggagaggttaggttggctgttggggatgaattgagactgaggtatcaa ggcgagcttcacaaggcttgggaaggtgtcggccacgtcattaagatccctaacaacgtt tctgacgaaatcggtctcgaattgagaagatccgatggcgtgccttccgagtgcacccac aactttgcagccgactttgtttggaagtcgaccagtttcgacaggatgcagttggcaatg aaaacctttgctgttgacgaaaagagtgtcagcggttatatctaccacaagctcctcggt catgaagtcgaagcccagtctcttcgtacccagatgcccaagcggttctcggcgcctggg cttcccgagctcaaccattcgcaaatgtatgcggtcaagagcgtcttgcagaaacctctc agccttatccaaggaccccctggcacgggtaaaactgtgacctccgcctcgattgtctat catctcgccaaaatgaacccgggtcaggtcctcgtttgcgccccctccaacgttgctgtc gaccagcttaccgagaagatccacgctactggtctcaaagttgtccgtctgaccgccaaa tctcgtgaagctctcgactcgagtgtcaacttcctgactctccaccaacaagtcgccaac agcaccacccacatcgagttgcaaaagttgattcagttgaagaacgaacagggagaattg agcagcaatgatgagaggaagtataagacgttgatccgccagtgcgagaaggagattctg ggagctgctgatgttatttgctgcacttgtgttggagccggtgacccgaggttgagcaaa ttgaggttcaggaccgtgcttattgacgaggctactcaggctgccgaacctgaatgtatg atcccgctcgtccttgggtgcaagcaagtcgttatggtcggtgaccaccagcagctcgga cctgtcatcatgaacaagaaagctgcccgtgctggccttacccaatctctcttcgagcga cttgttttgcttggcaaccgacccattcgtttgcaggtccagtatcgcatgcatccctgc ttgtccgagttcccctccaacatgttctacgagggctcgctccagaacggcgtcactgct cctgaacgattgaggaagaatgtggatttcccttggcccgttcccgatactcccatgttc ttctaccaaaaccttggtcaggaagagatttcgagcagtggaacttcgttcttgaatcga actgaagcctccaacgtcgagaagatcgtcaccaaattcttcaagagtggcgttgtcccc aatcaaattggtgtcgtcactccctacgaaggccaacgctcctacatcgtcaactacatg cagttcaatggctcactcaagaaagacctgtacaaggagattgaagtcgctagtgttgac gcgttccagggccgagagaaggactatattattctgagctgtgtgaggagtaacgagcat cagggtatcgggttcttgaacgacccgagacgtttgaatgtcgctctcacccgagccaag tatggtgtggttattttgggcaaccccaaggttttgagcaagcatcccttgtggcattac cttctcacccactataaggaatcgaatgtccttgtcgaaggcccgttgaataacctgcag cccagcatgattcagtttagcaagccccgccgttcgctggtcaagtcgatggaacagttc cgccgccacgagaccgttgccagggactacttgccttccaactctggcatgcctgtcgat cccatgagccgtcgctctggtaccccttcccgcttcgatgccagcttctaccgcactcac gatgccatgggatacattccatccgacgtccaatcgcttcgttcccaagccacctactcc tcgggtctccccatgttcggcgctcctggaccattcagcgctggcattccccgcggtgtc aacggcggtaaacgaagcacttacagctacgcctcttccatcgtctctcaagacgccgga cccagcgttacggataacagcagtgttgttggtggcggaagtgtccacagcagcaacctt gcctattctcaaagcgataggttgaggaggagaggatcgtttggcagctcgagcgtcact ggccagagcgatttgggaagcatgatcggatacgactacaagagtcaggatgatggaggg gacatggatgatatgaagagccagtacacaggtacacaaagcggagttacagtcttctag

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